HsaINT1028633 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9202525-9203951:-
Coord C1 exon
chr12:9203768-9203951
Coord A exon
chr12:9202685-9203767
Coord C2 exon
chr12:9202525-9202684
Length
1083 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
AAAAATCCTTTGCTTTTTAGCTC
3' ss Score
6.83
Exon sequences
Seq C1 exon
GCAGTATATGGTGCTGGTCCCCTCCCTGCTCCACACTGAGGCCCCTAAGAAGGGCTGTGTCCTTCTGAGCCACCTGAATGAGACAGTGACTGTAAGTGCTTCCTTGGAGTCTGGCAGGGAAAACAGGAGCCTCTTCACTGACCTGGTGGCGGAGAAGGACTTATTCCACTGTGTCTCCTTCACT
Seq A exon
GTGAGTGCTACGGTGCCAGCTGGCTATCCCTGCTTGATACATTTTATTGAGCTCTATAGGTCATGGTGATGGAGCTCTGGTGTGCGATCCCAAGGTATGACTTTAAGAATGTAGTTAGGACTTCAGGGGCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCAAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGATGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCCGTAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGTTTGCAGTGAGCCGAGATCGCCCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGGAATGTAGTTAGGACTTCAGAAAGGACTAAAAATAGTGAGTTTTCAACTATTAAGGAACAAAGCATTTTTTACCAGAGTAAGGAAGAAATACTCTTCTAAATTTCATTCCTAAATAATAATCCTATTGCCCACAAAAATTTCATGACTTAGAGGAGTTTTCTAGTTTTGATTGTAACTGTCTCTTTAAGGATCGGGCTGGACATTTCCTAGAAATAGATCATATGAAAATTTCATGATAAAAACTTTGCATGCAACATAATTTTTTGCACATGCAGGATACCCTAAGCAAACACCTAGTACCTCTTTAAAGTTGCCTAACTTGGGAAACTCAGCTCCTATGCTCTCCCATATTTTTTCAGAGATGTTTCTCTCCATTGCTTCAGAATATACATACTCAGTTAAAAGGCATCTAATTTAATAACTAGAGCTCTAGGTGAACTCCATGGAGATCTGGGTTCTATTGATGGCCACTCTTACTGATACCATTCCTCCATCTCACATTAATATCGTCACTCTTATGTCTGAAGAAATAGTCACACCTTCCTTCTCCTTGGTGAAGCTGAAGGAGAGATAGGAAATAGCAATGACTGAAGAATGCAGAGGGAGAAGACTGCACAGTTCCTCAGTAGTAAAAAATCCTTTGCTTTTTAG
Seq C2 exon
CTCCCAAGGATCTCAGCCTCTTCAGAGGTGGCATTCCTTAGCATCCAGATAAAGGGGCCTACGCAAGATTTCAGGAAGAGGAACACAGTTCTGGTACTGAACACCCAAAGTCTGGTCTTTGTCCAGACAGACAAACCCATGTATAAACCAGGACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0183514=A2M_N=PU(17.0=29.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTATATGGTGCTGGTCCC
R:
TGTCTGTCCTGGTTTATACATGGG
Band lengths:
343-1426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains