MmuINT0102546 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr6:122127579-122128715:+
Coord C1 exon
chr6:122127579-122127762
Coord A exon
chr6:122127763-122128555
Coord C2 exon
chr6:122128556-122128715
Length
793 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
CTTGTTCCTGATGTTCTCAGATC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GAAGTATATGGTGCTGGTCCCTTCTCAGCTCTACACTGAGACCCCTGAGAAAATCTGCCTCCATTTATACCATCTGAATGAGACAGTGACCGTTACAGCTTCCTTGGTATCTCAAACGGGAAGGAGAAACCTGTTCGATGAGCTTGTGGTTGACAAGGACTTGTTCCAATGTGTTTCCTTCATT
Seq A exon
GTGAGTACTATATACCTGTCCTGATTTATTTTATATTTATGAACATTTGTGAATATATATATGTAATATCCCTATATATTTCTTAAAAAGTTAATCTAGAAGCATATCAGTGAACTGAAAACAATAGAAATTTAGAACATTTACCCAATAAACAAATAGCATAGATCATCCCACCACAAAATAAGAAGAGACCATACTTGTGCATACACTGCTTTTCCATTGAATTACCTCAAAAAAAAAAAAAAAGAAAGAAAGAAAAAGAAAAAGAAAAACAAAAGCCTATGGCCCAGAGAAAGAAGGGGTTTGCCAATTCATAATACTTACCACTAGTGAGTTAATAAACTTTCAAACAGCACTCCATCTAATTAGAACCACATTTCCTATTCATAATCCTGATATCCTGAGTAAAGCTGGGTTTCTTCTTTGGGACCTATCCTCAAGACATAATTCCTGTAACCAGTAATATATTGTCTTACTCTCAACCTCAGTTTCAGAGTTAGATCTAATTTTCTTTCATTTCTGAGAGTTAATTTTCTATTGAGATTCTATTTACTCCATAAAAATCACTGTGTTTTTGTGTCCGTATAAACTCACATTGACTTACACAAAATGTTGTGTTTTCATTTCATTACTTTTTCCATGACACTGTTTTTTCCTTCAAATAATCCTTAAAGAGAAACTGATGGACCCTCCACCTCTTTCCTGTGAGGTGGAAGGAGAGACTGTTAGTGAGGTATTCTAAGAAGTGATGAGAGTCAGATGGTGAAGGGTCTCTTGTTCCTGATGTTCTCAG
Seq C2 exon
ATCCCTACACTCAACTCTCCTGATGAGGAGGAGTTTCTCTACGTGGACATCAAAGGGCCAACCCACGAATTCAGCAAAAGGAATGCAGTGCTTGTGAAGAACAAAGAAAGTGTTGTCTTTGTCCAGACAGATAAGCCCGTGTACAAGCCAGGACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
-Mug-ps1:NR_027619:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTATATGGTGCTGGTCCCT
R:
TGATTGTCCTGGCTTGTACACG
Band lengths:
343-1136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: