GgaINT0103680 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79336069-79337346:+
Coord C1 exon
chr1:79336069-79336252
Coord A exon
chr1:79336253-79337186
Coord C2 exon
chr1:79337187-79337346
Length
934 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GCCTTCTTACAATTCTCCAGATT
3' ss Score
7.64
Exon sequences
Seq C1 exon
GCAGTACATGGTGCTTCTGCCCTTTCTGATACACACTGATTCTCCTGAGAAAATCTGTGTTCAGTTGACTCACCTGAATGAGTCTGTGACACTGAATGCTGCAATTGAGTATCAAGGGGAAAACAGGAGCTTGATTGATGATGTGGTGTCGGAGAAGGATTTGTTTACCTGCATTCCTTTCACT
Seq A exon
GTGAGTATCTTAATCCCCGTAGGATAAACTGTAAAGGCTCTGAGTAATAATGAACAGAGTAACTGAATAGGTATTCACTTTCCTCTTGGTCACAGGTATATTCATGTCTATCCTCAAAACACTGTCTCTGCTGAGCTCTCCTTAGTAAAGATATCTAAATAGGAAATGCGGAATCCTGGAAAACCTGCCCCTGTCTAGGACAGGAGGAAGAGAGGCCTGGAGAAAGAAGTGCATTTGGAGAATGTGTTTAAAAATATTGTTTTGTAGCTGAGAATTTGCTCTACCAAATAGTATTATTGTGCTCTATATATCTGTTTTAGTTTCCATGGAAACTAATAGGCATTATTTTTGGAGTGACCTATGTAATTGGTAGTTCCTAAATCTAAAGCAACAGTCCTGGGCAACTGGGAATGTTGGTCAACTGGCTCACTGTACAGATTATATCTTTGGCCTGAAGGCTGAAGAACTGGCTTTCAGGATACCTAACAGGTTGACATCTATATCATACGTATATTGAAGACTGCTATTTTGTCACTTGGGGAGAGATGTATAGAGATCTGGTATGTCTGGTTTGAAAAAGGAAATGTTATGTAAAGACTAGAGATGTTACTTGAAAGAAGAGGGGGATTACTTCATTCCTCTGTGAATGTCAAGACGAAAAGGATAGATTTTCATCAATGCAGTAAGGACTTCTTAAAAATTGGTTGCAGAGTTGAGTTCCTTTACTGCATAATACTTGCATAATCACTGCATAGCCGTAGGAAAGTGGAGGAATATAGTACAAGAAAAGATTGGTCTCTTGTTCCTGATTCCAGTCCCTTCATCTCTGTGCTGTGCCTGTCAGGATTATATTAGATCTATTATTTTAGGAAAGCCTGTTCAAGAGGCCTTTACAAGTAGTTCATAACTCAGTCGCCTTCTTACAATTCTCCAG
Seq C2 exon
ATTCCAAAATCTAGGAGCCAGTCAACAGTCACATTTATTACTGTGACAGTGAAGGGGGAGACTCTGCAGTTCAGAAACCGCAAGTCAGTCCTGGTCAAGAATTCTGAGAGTTTGATCTTCGTCCAGACAGACAAACCCATCTACAAGCCTGGACAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964:ENSGALT00000037199:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0183514=A2M_N=PU(17.0=29.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACATGGTGCTTCTGCCC
R:
CCGTCTGTCCAGGCTTGTAGA
Band lengths:
343-1277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]