HsaINT0135671 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9355121-9356547:-
Coord C1 exon
chr12:9356364-9356547
Coord A exon
chr12:9355281-9356363
Coord C2 exon
chr12:9355121-9355280
Length
1083 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
AAAAATCCTTTGCTTTTTAGCTC
3' ss Score
6.83
Exon sequences
Seq C1 exon
GCAGTATATGGTGCTGGTCCCCTCCCTGCTCCACACTGAGGCCCCTAAGAAGGGCTGTGTCCTTCTGAGCCACCTGAATGAGACAGTGACTGTAAGTGCTTCCTTGGAGTCTGGCAGGGAAAACAGGAGCCTCTTCACTGACCTGGTGGCGGAGAAGGACTTATTCCACTGTGTCTCCTTCACT
Seq A exon
GTGAGTGCTACGGTGCCAGCTGGCTATCCCTGCTTGATACATTTTATTGAGCTCTATAGGTCATGGTGATGGAGCTCTGGTGTGCGATCCCAAGGTATGACTTTAAGAATGTAGTTAGGACTTCAGGGGCCAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCAAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGATGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCCGTAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGTTTGCAGTGAGCCGAGATCGCCCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGGAATGTAGTTAGGACTTCAGAAAGGACTAAAAATAGTGAGTTTTCAACTATTAAGGAACAAAGCATTTTTTACCAGAGTAAGGAAGAAATACTCTTCTAAATTTCATTCCTAAATAATAATCCTATTGCCCACAAAAATTTCATGACTTAGAGGAGTTTTCTAGTTTTGATTGTAACTGTCTCTTTAAGGATCGGGCTGGACATTTCCTAGAAATAGATCATATGAAAATTTCATGATAAAAACTTTGCATGCAACATAATTTTTTGCACATGCAGGATACCCTAAGCAAACACCTAGTACCTCTTTAAAGTTGCCTAACTTGGGAAACTCAGCTCCTATGCTCTCCCATATTTTTTCAGAGATGTTTCTCTCCATTGCTTCAGAATATACATACTCAGTTAAAAGGCATCTAATTTAATAACTAGAGCTCTAGGTGAACTCCATGGAGATCTGGGTTCTATTGATGGCCACTCTTACTGATACCATTCCTCCATCTCACATTAATATCGTCACTCTTATGTCTGAAGAAATAGTCACACCTTCCTTCTCCTTGGTGAAGCTGAAGGAGAGATAGGAAATAGCAATGACTGAAGAATGCAGAGGGAGAAGACTGCACAGTTCCTCAGTAGTAAAAAATCCTTTGCTTTTTAG
Seq C2 exon
CTCCCAAGGATCTCAGCCTCTTCAGAGGTGGCATTCCTTAGCATCCAGATAAAGGGGCCTACGCAAGATTTCAGGAAGAGGAACACAGTTCTGGTACTGAACACCCAAAGTCTGGTCTTTGTCCAGACAGACAAACCCATGTATAAACCAGGACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0183514=A2M_N=PU(17.0=29.6),PF077039=A2M_N_2=PU(12.2=27.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTATATGGTGCTGGTCCC
R:
TGTCTGTCCTGGTTTATACATGGG
Band lengths:
343-1426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)