HsaINT1028822 @ hg38
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:HGNC:9842]
Coordinates
chr9:133107988-133108866:-
Coord C1 exon
chr9:133108673-133108866
Coord A exon
chr9:133108407-133108672
Coord C2 exon
chr9:133107988-133108406
Length
266 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GAACTTTTCTCCTCTTGCAGCTC
3' ss Score
10.45
Exon sequences
Seq C1 exon
TGCCATCTCCTCCATCCTGGGCACCTGGCTGGACCAGTACTCGGAGGATTTCTGTCAACCTCCGGACTTTCCCTGCCTCAAGCAGCTGGTGGCCTACGTGCAGCTCAACATGCCAGGCTCAGACCTGGAGCGCCGTGCCCACCTTCTCCTGGCCCAGCTGGAGCACTCGGAACCCATTGAGGCAGAGCCTGAGG
Seq A exon
GTGAGGAGGACTGGGGTGGGTGCCAGAGGGTGAATGAGGAGGGGTCGGTGCTGGGCCACACGAAGAGGAGGCTCCAGGGTCTGGTGCTGGGTCAGGGGCCCAGATGAGCCTCAGACCACACAGGCAGGGACCACAGGCAGGAGAGTGGCCTGGTACACGTTTTGTGGGTTCGGGGAGAGAGGCTTCTCTGGAAGCCGGGGCTGTTCTGTGTCTTTGGAAAGGCACAGGAAAGGCTGGCATGTTGTTGAACTTTTCTCCTCTTGCAG
Seq C2 exon
CTCTGTCACCAGTGCCAGCTCTAAAACCAACTCCAGAGCTCGAGCTAGCTCTAACACCAGCTCGAGCACCCAGCCCAGTGCCGGCTCCAGCCCCGGAGCCAGAGCCAGCTCCAACACCAGCTCCAGGTTCAGAGCTAGAAGTAGCTCCAGCACCAGCTCCGGAGCTCCAGCAGGCTCCAGAGCCAGCTGTGGGACTAGAATCGGCTCCAGCGCCAGCTCTGGAACTAGAGCCAGCTCCAGAACAGGATCCAGCTCCCTCACAAACTCTAGAGCTGGAGCCAGCTCCAGCACCAGTTCCATCATTACAGCCTTCCTGGCCTTCACCTGTGGTTGCAGAGAACGGGCTGAGTGAGGAGAAGCCTCACCTCTTGGTGTTCCCTCCAGATCTGGTGGCAGAGCAGTTTACACTGATGGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271:ENST00000372050:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.848
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.7=48.5)
A:
NA
C2:
PF0061714=RasGEF=PU(7.4=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACTCGGAACCCATTGAG
R:
GAGGGAGCTGGATCCTGTTCT
Band lengths:
293-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains