HsaINT1029125 @ hg38
Intron Retention
Gene
ENSG00000214022 | REPIN1
Description
replication initiator 1 [Source:HGNC Symbol;Acc:HGNC:17922]
Coordinates
chr7:150368272-150369868:+
Coord C1 exon
chr7:150368272-150368318
Coord A exon
chr7:150368319-150369670
Coord C2 exon
chr7:150369671-150369868
Length
1352 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
TTTCTCTTCCCTCCCCACAGGTA
3' ss Score
14.75
Exon sequences
Seq C1 exon
CTTTTTGTGCTCCACTTTGGAACAAATCGGAAGCTAGGGCCTTCCAG
Seq A exon
GTGCGCCACCGCCGTCCCGGGACCGCCGCGGCCGCAAGCGTCCGCACTGCGGCCGGGGTGCGCGGCCTGAGAAAGGCCCGGGCAACGACGCTCCGGGGGCTTGCCGGAGCCCTCTTTGAAGTCTCCCGACGGGCTCCCAGCCTCTCATAAGGCAGCTAAGGCCGAACACCCCGGTGACCATAGGCCAGCCACGCGGTCGCCCGGGGACGCGCGTGCTCCGCAGGGACAAAGGGTCGGGAAACTTGAGCTCCGGCCAGTCCCAGAGAAACCCGGGCTGGTGGTCGCCATGGCAACGGAGTCCGACCCTCCGAGGCCTGCCGCCCTGGCGCGGCAGTGGCTTGAGTGACCCGGCCCGCTCTTGGCGGGGGCGCCCGCGCCCCGGCCCCGGCAGTCCCTCCCCGCCCCCAGGCCGCGGCCGCGGGAGCCGGCGACTGACCCTCGGCAGCTCCTGTAGTCACGTGGCGCTGGGAACCCGGCGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCCGCTGTCGCCGCGGCGGGGCGGGGAGCGAGAGTGGGCCGCGGAGGCCGGCCTTCGGGCTCCATGGACGGGCGCCGCGTCCCTGCACAGCCCGCCGCAGAGGTACGGCCGGGGCAGGGGCGCGGGGCCACCGCGGGCCCGCGGGGGGCCGCTCCACCTGCGGGGCGCGTGACCGTGAGTGTGCGCGACCGTGTGTGAGTGCGCGGGGGGGGACGCTGCTGGATCTGCGGGGGTGGGGGAGCGCACCTGCGCACAGGCTCCGCGAGCTGCGCCGTGCGTGGGACCCGAAATGGCTCACTCGCAAGAACGGGACCCGTGTGCCCGGGAGCGTGGACGGAGGACACGCATCAGTACAAAAGGGCGGTGTGGGGCTTCTGCCACCCGCGGCCAGCCGCGATGCGGAAGGGGATTCTGACGGAGTCGTGGTCACACCAGCTGGCCCTGCGCAGCCCCATGGGAAATAGGCCTGGAATTCCTGTCGGGAGGAGGCTGGGGGAAGGGGAGCCAGCAGGGATTCCAGAGTTCCTGCCATAGGCCGGCCTTTGGCCATCAGGGAAAGCCCAGACTCTGGCCACAGAATGGAGAATTCGTTCCGTGACCTTACCAGGGAAGAAAGTGACCCCGAAAGACAGCAGTGTGCTTCCTTGTTGAAGGGGCACATTCATTTATTAATCCAATGTCCATTAAGGTCACTCTGCCAGGCAGGATGTGGGGCTTATGGCTGGTGCGTGTGGCTTTGTGGGGGGAGGGGTTGTGGCTGGTGAGGACACAAAGCTGACTGCCCTAGAGGAGCTCAGAGCCTCACTTCTGTTTTCTCTTCCCTCCCCACAG
Seq C2 exon
GTAAGGCTGGCCTCTCTGCAGTCAGAGGTCTGAGCTCTGCCATGGGGATAGGGGTGTCTTTATTACTGCAGTTTTCTCTAACACCTGGGGGCTACCGGAGTGTGGGCCGAAGCAGGCGCTGCAGCCGCGGAAGTATCCCCAGGAACATCCCCAAGAGGAGCTGGAAAAAGCCTCATCCCCAGCTCTGCAGTCTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214022:ENST00000479668:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.355
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTTGTGCTCCACTTTGGA
R:
GAGACTGCAGAGCTGGGGAT
Band lengths:
241-1593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains