MmuINT0133634 @ mm10
Intron Retention
Gene
ENSMUSG00000052751 | Repin1
Description
replication initiator 1 [Source:MGI Symbol;Acc:MGI:1889817]
Coordinates
chr6:48593891-48594976:+
Coord C1 exon
chr6:48593891-48594052
Coord A exon
chr6:48594053-48594790
Coord C2 exon
chr6:48594791-48594976
Length
738 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
CTTTTCTCTCCCTTCCCCAGGTA
3' ss Score
13.33
Exon sequences
Seq C1 exon
GTGGAGCTGGGAACCCAGCGCGTGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCCGCTGTCGCCGCTGCGGGGCGGGGAACCGGCCGCAGAGGCCGGCCTGGTGCTCTATGGATGGGCGCTGCGTCCCTGGAGGGCACGCGGGAGAG
Seq A exon
GTATGGGTCGAGTAAGGGCGCAGGGGCCACCGAGGGCGTGCGAGGGCAGCTCCACCTGTGGGGCGCGTGACCGTGAGTGTGTGCGGCTGTGGGGTTCGCGCGCGCGCGCGGAATATGAAAGGGGGGGGGGAGTGTTGAGGCGCGGGGCGAGCGCACCTGCGCACAGGCTCCGCGGGCTGCGCTGTGCGTGGGACCCGAGATGGCCCACTGGCTGGTCCGAACCGGTCCAGCGAGCCAGCAAATGTGGACGGAGGACACGCATCTATACAAAGGGGGAGTGTGTGGGCCTGCTGCCACCCGGGGCTGCCCTAGATGACCAAGGAAATTCTGGAGAGTCCTGGGCACTCTGGCGCTCCCTGCGTAGACCCTCGGGAGACAGGCCTGGAATTTATGTTGCGCGGAGAGTGGGGGAAGGGGAGGCAATAGGGATTCCAGAGTTACTGCCTAGGCAGCCCTTTGGCCACTGAGAAAGAGCCTTGCAACAGATGGAGGAGGCTATTCTTCTGGGGCCCTACCAGGCTAGGAGGTGGCCTCCAAAGGCAGCACTGTGCTTCCTCAGTAAAGGGTCATGCTCATGCTTTATTTAGTTCAGTGTCCGCTAGGTCATTCGACCAGGCTGGGTATGGAGTTCAAGGCTGAACTCTGTAGCCTTGAATCTGGGAGAGACTGGGTGATGACACAAACCTGCCCTGGCTTAGCGCAGAGCCTCACACTCGTTCTTTTCTCTCCCTTCCCCAG
Seq C2 exon
GTAAGGCTGACCTCTCAGCAGTTAGAGGTCTGAGCTCTGCCATGGGGATAGGGATGTCTTTATTGCTACAGTTTTCTCTGTCATCCGGGGGCTACCGAAGTGTGGGCCGAAGCAGCCGAAGTCTCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCCTCACCCCCAGCTCTTCAGTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052751:ENSMUST00000118229:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.554
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGCCTGGCAGTTGT
R:
CTGAAGACTGAAGAGCTGGGG
Band lengths:
310-1048
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types