HsaINT0139350 @ hg19
Intron Retention
Gene
ENSG00000214022 | REPIN1
Description
replication initiator 1 [Source:HGNC Symbol;Acc:17922]
Coordinates
chr7:150065879-150066957:+
Coord C1 exon
chr7:150065879-150066030
Coord A exon
chr7:150066031-150066759
Coord C2 exon
chr7:150066760-150066957
Length
729 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
TTTCTCTTCCCTCCCCACAGGTA
3' ss Score
14.75
Exon sequences
Seq C1 exon
CCCGGCGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCCGCTGTCGCCGCGGCGGGGCGGGGAGCGAGAGTGGGCCGCGGAGGCCGGCCTTCGGGCTCCATGGACGGGCGCCGCGTCCCTGCACAGCCCGCCGCAGAG
Seq A exon
GTACGGCCGGGGCAGGGGCGCGGGGCCACCGCGGGCCCGCGGGGGGCCGCTCCACCTGCGGGGCGCGTGACCGTGAGTGTGCGCGACCGTGTGTGAGTGCGCGGGGGGGGACGCTGCTGGATCTGCGGGGGTGGGGGAGCGCACCTGCGCACAGGCTCCGCGAGCTGCGCCGTGCGTGGGACCCGAAATGGCTCACTCGCAAGAACGGGACCCGTGTGCCCGGGAGCGTGGACGGAGGACACGCATCAGTACAAAAGGGCGGTGTGGGGCTTCTGCCACCCGCGGCCAGCCGCGATGCGGAAGGGGATTCTGACGGAGTCGTGGTCACACCAGCTGGCCCTGCGCAGCCCCATGGGAAATAGGCCTGGAATTCCTGTCGGGAGGAGGCTGGGGGAAGGGGAGCCAGCAGGGATTCCAGAGTTCCTGCCATAGGCCGGCCTTTGGCCATCAGGGAAAGCCCAGACTCTGGCCACAGAATGGAGAATTCGTTCCGTGACCTTACCAGGGAAGAAAGTGACCCCGAAAGACAGCAGTGTGCTTCCTTGTTGAAGGGGCACATTCATTTATTAATCCAATGTCCATTAAGGTCACTCTGCCAGGCAGGATGTGGGGCTTATGGCTGGTGCGTGTGGCTTTGTGGGGGGAGGGGTTGTGGCTGGTGAGGACACAAAGCTGACTGCCCTAGAGGAGCTCAGAGCCTCACTTCTGTTTTCTCTTCCCTCCCCACAG
Seq C2 exon
GTAAGGCTGGCCTCTCTGCAGTCAGAGGTCTGAGCTCTGCCATGGGGATAGGGGTGTCTTTATTACTGCAGTTTTCTCTAACACCTGGGGGCTACCGGAGTGTGGGCCGAAGCAGGCGCTGCAGCCGCGGAAGTATCCCCAGGAACATCCCCAAGAGGAGCTGGAAAAAGCCTCATCCCCAGCTCTGCAGTCTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214022-REPIN1:NM_001099695:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.365
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGCAGTTGTGAACTC
R:
CCTGGAGACTGCAGAGCTGG
Band lengths:
326-1055
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)