MmuINT0133632 @ mm9
Intron Retention
Gene
ENSMUSG00000052751 | Repin1
Description
replication initiator 1 [Source:MGI Symbol;Acc:MGI:1889817]
Coordinates
chr6:48543882-48544975:+
Coord C1 exon
chr6:48543882-48544051
Coord A exon
chr6:48544052-48544789
Coord C2 exon
chr6:48544790-48544975
Length
738 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
CTTTTCTCTCCCTTCCCCAGGTA
3' ss Score
13.33
Exon sequences
Seq C1 exon
GTAGTCACGTGGAGCTGGGAACCCAGCGCGTGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCCGCTGTCGCCGCTGCGGGGCGGGGAACCGGCCGCAGAGGCCGGCCTGGTGCTCTATGGATGGGCGCTGCGTCCCTGGAGGGCACGCGGGAGAG
Seq A exon
GTATGGGTCGAGTAAGGGCGCAGGGGCCACCGAGGGCGTGCGAGGGCAGCTCCACCTGTGGGGCGCGTGACCGTGAGTGTGTGCGGCTGTGGGGTTCGCGCGCGCGCGCGGAATATGAAAGGGGGGGGGGAGTGTTGAGGCGCGGGGCGAGCGCACCTGCGCACAGGCTCCGCGGGCTGCGCTGTGCGTGGGACCCGAGATGGCCCACTGGCTGGTCCGAACCGGTCCAGCGAGCCAGCAAATGTGGACGGAGGACACGCATCTATACAAAGGGGGAGTGTGTGGGCCTGCTGCCACCCGGGGCTGCCCTAGATGACCAAGGAAATTCTGGAGAGTCCTGGGCACTCTGGCGCTCCCTGCGTAGACCCTCGGGAGACAGGCCTGGAATTTATGTTGCGCGGAGAGTGGGGGAAGGGGAGGCAATAGGGATTCCAGAGTTACTGCCTAGGCAGCCCTTTGGCCACTGAGAAAGAGCCTTGCAACAGATGGAGGAGGCTATTCTTCTGGGGCCCTACCAGGCTAGGAGGTGGCCTCCAAAGGCAGCACTGTGCTTCCTCAGTAAAGGGTCATGCTCATGCTTTATTTAGTTCAGTGTCCGCTAGGTCATTCGACCAGGCTGGGTATGGAGTTCAAGGCTGAACTCTGTAGCCTTGAATCTGGGAGAGACTGGGTGATGACACAAACCTGCCCTGGCTTAGCGCAGAGCCTCACACTCGTTCTTTTCTCTCCCTTCCCCAG
Seq C2 exon
GTAAGGCTGACCTCTCAGCAGTTAGAGGTCTGAGCTCTGCCATGGGGATAGGGATGTCTTTATTGCTACAGTTTTCTCTGTCATCCGGGGGCTACCGAAGTGTGGGCCGAAGCAGCCGAAGTCTCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCCTCACCCCCAGCTCTTCAGTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052751-Repin1:NM_001079902:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCACGTGGAGCTGGGAAC
R:
TGAAGACTGAAGAGCTGGGGG
Band lengths:
353-1091
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: