HsaINT1029588 @ hg38
Intron Retention
Gene
ENSG00000229531 | RP1-102G20.5
Description
NA
Coordinates
chr1:174945824-174948876:-
Coord C1 exon
chr1:174948723-174948876
Coord A exon
chr1:174945895-174948722
Coord C2 exon
chr1:174945824-174945894
Length
2828 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TATTTTTCCTCCTCTCACAGCCT
3' ss Score
9.21
Exon sequences
Seq C1 exon
GATCACAATCAAGAGTTTAAAGACAACCGGTCTCTGCTCCAGCCACACAGGACTTCTTCTAGTACCTTTACTACATCATGCCTCCCCTGCCTCAGGCTTCTGCTGGGATGGATCGAGCACATTCACCCTAAAATTCTGATTCAGAAGATCTGAG
Seq A exon
GTATGATCAGTCACCTTTATCTTTTTTTTAATCTTAATATTTGTGGATACATAGTAATTTAATCTATATATGGGGTACAAGAGATAGTTTGAAACTGGCATGTAATGTGTCATAATCAAATCAGGTAAAATGGGGTAGCGATCCCCTCAAGCATTGATCCTTTGTGTTACAAAGAATCCAGTTACACTCCTTTTTTTTTTTTTTTTTTTTTTTGAGGCAGGGTCTCGCTCTGTGGCTGCGGCTGAAGTGCAGTGCCGCTCACTGTAGCCTCGACCTCCTGGGCTCAAGTGATAGTCCCACCTCTTAGCCTGTAGCTGGGACTACAAGCACCCGCCACCATACCTGGCTAATTTTTTGTATTTTTTGTAAAGACAGGGTCTCGCTATGTTGACCAGGCTGGTCTTGAAACCCTGGGCTCAAGTGATCTGACCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGATGTGAGCCACTGCACCCAGCCCAATTATACTCTTTTAGTTATTTTTAAATGTACAATTAATTATTATTGACTATAGTCATCCTGCTGCGCTATCATACACGAGGTCTTACTCATTCTTTCTCATTTTTTTTTTGTTCAAGTACCTTTATCTTTACAAAGCTACTCAGGCAGTTTTGATATACTGTCCATCTGAAAACCACTGAACTAAACATTAAGCACTAGAAAGGGAGAAGAGACAGGCTAGAGAAGCTTTTATGAATTGGCCTGAGAACACAACCACCACTTCCTAAGGGAATATCCATTCTGAGTTTCAAACAACCAATTTATACATAAATTTTAGGAGAGAAGAAATTTGTAAGATCAGGAAGGACTATTTTAGTGTCCCAAAATATTTCAAGAATCTATTTATATAAGCAGCTTGGATATAAGAATAAAATCAAGTTTTAAAGAAGAGAAAAACCATATTCTTCGAGCACAATTATTTGAACAGCAGTTTCTCTTTGATACTTTATTTGAGGTGGTTTAGAAATTAAACAGGCTGGCTGGGTGCGGTGGCTTACACCTGTAATCCCAGCACTTTGGGAAGCTGAGGCAAGTAGGTCACCTGAGGTCGGGAGTTTGAGACCAGCCTGGCCAACATGGTGGAACCCCATCTCTACTAAAAATACAAAAACATTAGCCAGGCACAGTGGCTCATGCCTATAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCTGAGGCTGCAGTGAGCCAAGATCGCGGCATTGTACTCCAGCCTGGGTGACAGGAGCGAAACTCCATCTCAACAAAAAAACGAAAGAAAGAAAGAAATTAAACAGGCTTGGCTGGGCATGGTAGCTCACGCCTGTAATCCCATAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGAGTTTGAGACCAGCCTGATCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTCAGTGAAACTGTCTGAAAAAAAAAAAAAGAAAAAAATTAAACACGCTTGCATTTGAAAACTTTCTCTGCCAAATACTAGCTATATAATTTTATGAGCAATTTACTTAAACCTCTTACTCAGAACTTGAATTGTTTATGTTTTGTAATAGGGTAACACAAACAACTACGATGACCATCTCCTTTAATTGAGCACAAAATGCATGCTGCAGCACTGACCTAAGCACTGAACACATACATACATATATATATACATATATATACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATATTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTTTTGCCCAGGCTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCCACTGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAACTGGGATTACAAGCGCCTGCCACCACACTTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTACCATGTTGGCTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCTCAAAGTGCTAGGATGACAGGCGTGAGCCACAGTGCCCAGCCATCATTTAGCATTTTTTATATTTCTTAAGCCTCACAAAGAAACTGGGTGTTACTATATCCGTTTTATAAATTGAGTAAACCAAGAAAGACTAAGTAACACACACAGGCCCTATAATAATGACAGACCCTATAGGCTTTTGTTTTAAGAGATTGGGTCTCACTATGTTGCCAGGCTGGCTATGAACTCCTGGGCTCAAGAAGTCCTCCTGACTCAACCTCCCAAGTAGCTGGGACTACAGGAACATGCCCCTGCACCCAGCTACCCAAAAGGTCTTTTTGACACCAAAGTTAAAGCCTTAGTCATACACTATGTTACATGACTATCATCTACATTGCCTGTCATCTAGCCAACATGCATAGCTCTCAAACCTAGGACCTTTGATAAGCCTCGTCAGTAGCCTGCAGCAGTTAACTGAGCTAATCAGCTCAAGGATGGAGGTGCTGTTAATGCATAACTGAGAGGTAATGAACCTAAGATATCTGCCACATTACCAGGCATAACGTAGGAGATTAAAAAGAAAAAAGAAAAAGAAAGAATACCTTTACTTTAATCTTTCTGGGCAAGCTAGGAAAAAAAAAAAAGAGAGAGAGAGAGAGACAGATAGCCAAATAGACTCTGGGGTGGTTGAATCAGGAATTTAACTCTAGGAGAAGCCTGCTTAAAATTCCATAAAGTCTTAAGAGGGGGCAGACTGAAAATAATATATTTTTCCTCCTCTCACAG
Seq C2 exon
CCTTCTGAAAAAAAAGCATTGAGAGCATAAACCACTCAGAAGATTTATAGCTTAAAGCAGATCACCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229531:ENST00000452442:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains