HsaEX0051803 @ hg38
Exon Skipping
Gene
ENSG00000152061 | RABGAP1L
Description
RAB GTPase activating protein 1 like [Source:HGNC Symbol;Acc:HGNC:24663]
Coordinates
chr1:174811832-174957549:+
Coord C1 exon
chr1:174811832-174811960
Coord A exon
chr1:174877392-174877605
Coord C2 exon
chr1:174957457-174957549
Length
214 bp
Sequences
Splice sites
3' ss Seq
CTCCACCCCCTCGAACTCAGGTG
3' ss Score
5.5
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ACCTCAAAGGAAGACCTTCTGCAGGCTGATTTTGAAGGTGCTTTAAAGTTCTTTAGAGTTCAGCTTCCAAAGAGATACAGGGCAGAGGAAAATGCAAGAAGACTGATGGAGCAGGCTTGCAATATTAAA
Seq A exon
GTGGGTGTGTACACTGGCACTGAGCTGCAGTAGGATTTTTCCTTGGATAGTCTGGTCTGGAGCTGGGACAGCAGCTGCTGCTGTGGAAAGGCCAGCTGGCAAGATGATGGAAGAAATCTCCATTATGGTAGCCTATGACGCCCATGTTTTCAGCCAGCTGCACGATGAAGACTTCCTCACTAGTCTGGTGGCCATCAGCAAGCCCAGGTCTATG
Seq C2 exon
GTACCAACCAAGAAGCTGAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAACAGGAAGACCCAATGGATAGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152061_MULTIEX3-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.373
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(11.8=14.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCAGGCTGATTTTGAAGGT
R:
TGTATCTATCCATTGGGTCTTCCTGT
Band lengths:
204-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development