HsaINT1029591 @ hg38
Intron Retention
Gene
ENSG00000229531 | RP1-102G20.5
Description
NA
Coordinates
chr1:174934947-174935506:-
Coord C1 exon
chr1:174935399-174935506
Coord A exon
chr1:174935101-174935398
Coord C2 exon
chr1:174934947-174935100
Length
298 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TTATCCCTTTTTGCTGACAGAAA
3' ss Score
7.36
Exon sequences
Seq C1 exon
TGTTAATGATTTTCTGAGACACATTTTCAAAGGATTATTTATAAGAACGAGACAAAATTAAGCCAAAGTCCATATTACGTGAAACTTCATCTCCTAGGCTTTGTAAAT
Seq A exon
GTGAGTGGGTATATGTTTATATGTCTTGTTTCTTGTCTGGAAAAAGTCAGAAGTACTATATCTAGATATTCTCAAAACCTTAATCACATAAACTCAGAAAAAACAGAACTCAAAGATATTTACAAAAATTTTGCAGTAAGACAATAAAAGTCTCCTTGAGAACAAAGACAATGAAAAATCATAAATATCAATCACCTTTAAGAAGGGAATCAGCTTTAATTCAAGGGAATCTTTAATTTAAACTGAAACCATTTTAAAATTCAGGTTCTGTGTCCTAATTATCCCTTTTTGCTGACAG
Seq C2 exon
AAAAGCTAAAGGATACAGGACACATCTGACCCAGGAATCTAAGCAAGTAACATACTACCTGGCTAATCCAGTTGAGGTGAAGGTCACAATACTGAATTTGAATATGCTGTGTTCTCTACTGTAAATAAAGTATTTTGTTTATCTTTTCATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229531:ENST00000452442:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTGAGACACATTTTCAAAGGA
R:
CTTTATTTACAGTAGAGAACACAGCA
Band lengths:
229-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains