MmuEX0038436 @ mm10
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:160257443-160342164:-
Coord C1 exon
chr1:160342036-160342164
Coord A exon
chr1:160307176-160307398
Coord C2 exon
chr1:160257443-160257535
Length
223 bp
Sequences
Splice sites
3' ss Seq
CGCTGGGTTTTGACACCCAGCCC
3' ss Score
2.73
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ACCTCAAAGGAAGACCTCCTTCAGGCTGATTTTGAAGGTGCTTTGAAGTTTTTCAGAGTTCAGCTTCCAAAGAGATACCGGGCAGAGGAGAATGCAAGAAGATTGATGGAACAGGCTTGCAATATTAAA
Seq A exon
CCCCTGGCTCTCAAGTGGGTGTGTGCACTGAGCTGCCCTAAGACCGTTTCCCTGGATAGTCTGGTCTGGAGCTGGGGCAGCAGCAGCTGCTGTGAAGAAGCCAACTGGCAAGATGATGGAAGAAATCTCCATTATGGTAGCCTATGACGCCCATGTTTTCAGCCAGCTGCATGATGAAGACTTCCTCACTAGCCTGGTGGCCACCAGCAAGCCCAGGTCCATG
Seq C2 exon
GTACCAACCAAAAAGCTGAAGAAATATGAAAAAGAATATCAGGCGATGCGGGAGAATCAGCTGCAGCAGGAGGACCCAATGGATAGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.047 A=0.030 C2=0.454
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(16.7=14.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000028049fB3313
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTTCAGGCTGATTTTGA
R:
TATCTATCCATTGGGTCCTCCTGC
Band lengths:
204-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types