MmuALTA1015793-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:160307176-160309171:-
Coord C1 exon
chr1:160308978-160309171
Coord A exon
chr1:160307785-160307911
Coord C2 exon
chr1:160307176-160307784
Length
127 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TACTTTTTTTTTTTTAACAGAAT
3' ss Score
9.48
Exon sequences
Seq C1 exon
GGTGCTATTCAGCTATCAGAGTGGCAGCACTGAGTCACTGCAGAAAGGGAAGAGGGGAAGCAGTTGCTCTGGCTTTCACATCTGGAGAGCCACGCTGCGAGGTAAACCTCCAAGTCTGCTGCCCTGATGAAAATATGACGAGGTCCACGCTATCTTTAAAAATACTACTGAAAAGATAGAAAGGAATTCAAAAG
Seq A exon
AATTACTCAGAAGGGAGAGAAATTCTTTTTTTCCCCCTTCCGTCTTCAGGAGATAAATTTTAACTGCACCAAGAATTCTATAAATTCTGAGAAATAATAATGGCTTATCATCTTTTTATTTTCTAAG
Seq C2 exon
AATAAGGAAAAATAAGCACTGATTGCTTTAAGAAAAATTGCTCTTCTTCCAAGAAGAATCTTCATGTGAATAATAATGAAGAGATGAACTGTTTGAAACTGAGTTACCGAGGACGTAACATAAATCAACTTTTGTTTGGGAGGAATTTCATATAGGCTATTTCTAGTAAGGAACCCTTCTTCTTTCTATTTTCTGAAGTGTAAAGAAGATTCCCGGCCTGGTGGTCTCATGCGCTGGGTTGAGAATGCAGGTGTTTTTGGTGTACACTTCCTGCAGAGATAAGAGACCTTGTGGTTTCCACTGGGGGTGAATTACTAGGCAAGTCTGTGATAGCAGCTGCCTTTTCTTTTTTCCTCCTCTCTTACCCGCTGGGTTTTGACACCCAGCCCCTGGCTCTCAAGTGGGTGTGTGCACTGAGCTGCCCTAAGACCGTTTCCCTGGATAGTCTGGTCTGGAGCTGGGGCAGCAGCAGCTGCTGTGAAGAAGCCAACTGGCAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-54-57,54-56-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTCACATCTGGAGAGCC
R:
TGTTACGTCCTCGGTAACTCAGT
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types