RnoEX0073423 @ rn6
Exon Skipping
Gene
ENSRNOG00000002736 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:RGD Symbol;Acc:1304620]
Coordinates
chr13:78011536-78089887:-
Coord C1 exon
chr13:78089759-78089887
Coord A exon
chr13:78061192-78061896
Coord C2 exon
chr13:78011536-78011628
Length
705 bp
Sequences
Splice sites
3' ss Seq
TTGGTACTTTTTTTTAACAGAAA
3' ss Score
7.82
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ACCTCAAAGGAAGACCTCCTGCAGGCTGATTTTGAAGGTGCTTTGAAGTTTTTCAGAGTTCAGCTTCCAAAGAGATACCGGGCAGAGGAGAATGCAAGAAGATTGATGGAGCAGGCTTGCAATATTAAA
Seq A exon
AAATACTCAGAGGGAGAAAGGATTCTTTTTCCCCGCTTCCGACTTCAGGAGATAAACTTTAACTGCACCAAGAATTCTATAAATTCTAAGAATAAGAAAACATATGCACTGATTGCTTTAAGAAAAGTTACTTTTCTTCCAAGAAGAATCCTCATGTAAATAACAATGAAGAGATGAACTGTTCGAAACTATCTGAATTACCAAGGACATAACATAAATCAGCTTTTGTTTTGGATGAATTTCATATAGGATATTTCTAGTAAGGAAACCTTTCTTTCTGTGTTTTGAAGTGTGAAGAAGATTCCCGAACCTGAAGTTCTCATGTGCTGTGTTGAGAATGCAGGTGTTTATGGTGTACACTTCCTGAGTAGATAAGAGACCTCTTGTTTTCCATTGGGGGTGAATTACTAGGCAAGTCTGTGATAGCAGCTGCCTTTTCTTTTTCCTCCTCTTTCCCTCTGGATTTTATCACTCAGCCCCTGGCTCTCAGGTGGGTGTGTGCATTAGCACTGAGCTGCCGTAGGAGTTTTTCCCTGGATAGTCTGGTCTGGAGCTGGGGCAGCAGCTGCGGCTGTGGAGAAGCCAGCTGGCAAGATGATGGAAGAAATCTCCATTATGGTAGCCTATGATGCCCATGTTTTCAGCCAGCTGCATGATGAAGACTTCCTCACTAGCCTGGTGGCCATCAGCAAGCCCAGGTCCATG
Seq C2 exon
GTACCAACCAAAAAGTTGAAGAAATATGAAAAAGAATATCAGGCAATGCGGGAGAACCAGCTACAGCAGGAGGACCCAATGGATAGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002736_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(2.9=14.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000003671fB12032
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGCAGGCTGATTTTGA
R:
TGTATCTATCCATTGGGTCCTCCT
Band lengths:
206-911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]