BtaEX0022241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024482 | MGC157043
Description
MGC157043 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A7YY30]
Coordinates
chr16:57589511-57651593:+
Coord C1 exon
chr16:57589511-57589611
Coord A exon
chr16:57590798-57591533
Coord C2 exon
chr16:57651501-57651593
Length
736 bp
Sequences
Splice sites
3' ss Seq
GTACTTTTTGTTTTTAACAGAAA
3' ss Score
9.54
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
CCTGCGAGATAAATCGGAAGCTTTCTGGTGCTAGTGAATGCACGAAGGGAGTCACAGTATCTTTTCAAGTACTTCTGAAAAGATAAAAAGGAATTAAAAAG
Seq A exon
AAATACTCAGAGGGGAAAAGGAACCTTTTTTTGTTTTTCACACTTCTTGAGATAATTTTTAATTACACCAAGAATTCGATAAACTCTGAAAAATTAAATGTTGCCCTCTATTTATTTTCTGTGAACGTGAAAAAAATAAGCAGTAAGAAAATCTACATCTTCTCCAAGAAGACAAATCTTGATATAAGTAATACTGAAGTAAGAAGATAAACTTAAAAAAAATTCTGATTATCAAGAACATAACATCAATTTTTGTGGTTTTGGGTTTCCTTTTTTTCATTTTTGCTCTAGGATATTTCCAGTTAGGAGACTTTTTTGAAGTTTAAAGAAGATTTCCAAAAACTAAATTTTCCAGCTGCTCTGTTAAGAATGCAGAAGGTGTTTATAGTATATACTTCCTCCGTAGATAAGAGACCTCGCTCAGTTTTCTACTGGGGGTGAATTGCTAGACAAGCCTATGATAGCAGCTGCTTTTTTTTTTCCCCTCCTCTGGATTTTTGACACTCCACCCCCTCAAACTCAGGTGGGTGTGTGCACTGGCACCAAGCTGCAATAGGATTTTCCCCTGGATAGTCTGGTCTGGAGCTGGGACAGCAGCTGCTGCTGTGGAAAGACAGCTGGCAAGATGATGGAAGAAGTCTCCATTATGGTAGCCTATGACGCCCATGTTTTCAGCCAGCTGCACGACGAAGACTTCCTCACTAGTCTGGTGGCCATCAGCAAGCCCAGGTCTATG
Seq C2 exon
GTACCAACCAAGAAGCTAAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAGCAGGAAGACCCAATGGATAGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024482-'5-7,'5-6,6-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.435
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000033990fB4268
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGAGATAAATCGGAAGCT
R:
TATCTATCCATTGGGTCTTCCTGCT
Band lengths:
190-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development