HsaINT1030522 @ hg38
Intron Retention
Gene
ENSG00000242686 | RP11-1191J2.2
Description
NA
Coordinates
chr4:653059-653971:-
Coord C1 exon
chr4:653758-653971
Coord A exon
chr4:653684-653757
Coord C2 exon
chr4:653059-653683
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
ATTGGTGGCTCCGTGGCCAGGTT
3' ss Score
4.91
Exon sequences
Seq C1 exon
GAGGCCCACGGAGTACCGCTCGCAGTTGAGGTAGGCCCGCACCGTGTAGAAGGCCTTGTGGAACTGCCTCTCGATGTCCGTCAGCTCCTCAAACACCTTGTTGGCCGACCACAGCAGCACCTGGAGGGAGGGGCACACCTGTGGGCCTGTGGCCACTCCCACCCTCACGCCGGTCTGACCACAGCAGCAGGGGTTTAACTCAAGCCTGACACAG
Seq A exon
GTGCGCTCCCTGATCTGACCACCTGCCCAGCCGTGGAGCCTGGCACAGACCCTGATTGGTGGCTCCGTGGCCAG
Seq C2 exon
GTTTCATCTGAGCTTGTGGGGCCCGGGAGCTGGCTGGCGGTGAGGCCTCGAGGCTGCGGTCGTGTCCCTGATCACTCAGGAGTGGACGAGTGGAAAGTGGAATCTGTCGCTTTGAGCTTGACAGGCAAACATCCGACCAGCCCTTCCTCCGCCCGGCTGCTCCAGAACCACCTGCGGCGAGCAGGGCTTTGAGAACATCGGGCCGTGGTTTCCGCACGTCAGGCCGCCTGTGGCCTCCGCCAAGCGTCTGAGAGTGAAGCATTGCTGACGCACTCCACGAGGTCCTGGCCAGACCCCACTCAGGACATCCCGCTGCACAGGCCCCTGGTTGCTGGGTCAGCGCTGCCACCAGGCTCAGACTCACCCCAGGGCCCTCCTTGGGCCACCTTTCTCTGCCTCCTTGGTCAAGGCCCAGACCCAGGCCCCACCAGGCCCTGCCTCCTCACACTCGCGGCGGCCGCTGGGTCTTCTACCGCATGGTGCCAGCTCCCTCTCCTCCGCTGCGGTGTCCTAGCCCAGCTCTCTCCCTGCCAGGCCCTCTGAAGTTCCACCCCCTGGCACTCAGCTCATGGTGGGAACAGGACCAGGCTCTCCTGTTGCCAAGGGCAGTGAGATGTTCGTAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242686:ENST00000468356:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAGCAGGGGTTTAACT
R:
GGTCGGATGTTTGCCTGTCAA
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains