HsaINT1033741 @ hg38
Intron Retention
Gene
ENSG00000254707 | RP11-35J10.4
Description
NA
Coordinates
chr11:7705288-7706278:+
Coord C1 exon
chr11:7705288-7705655
Coord A exon
chr11:7705656-7706224
Coord C2 exon
chr11:7706225-7706278
Length
569 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CTTCTCCTATTTTCCCAAAGGAA
3' ss Score
9.48
Exon sequences
Seq C1 exon
TTTTATAGTTCTTGTCATGCAGAATTGTGATAATGAATTATTTGCCTCTATCATCGGACTATGAACTACTCAAGGGAAAAAACTTGCCTTATTCACCTCTGCATTTCTAAGGTTTAGCTTAATTCTTGGCATAAGTAAGCACTTAGAAACACTGGATGGACAAACAAATGACTTTTCTTGAGAACACATCCTTAAGAGTATAGCTATTTAGATCAACATGTTAAAATATTCAAAGCTCTTTCATACAGCTTCTCATTTAATCCCACTCTATGCCTATAAATGAAGCACTGTTATCCCCACATTGCAGATGAGAAAACTGAGAATCAAGGAGACACACAGCTGGATAATGGCAGAGCATGAATGTAACA
Seq A exon
GTAAGTGTTTTGATCCTGAACCCAGTGCCAGGATGACATTGGAACAAAAGCTTATTTTCTAACTGTTTCAGTTGAATGAGTCATAAATACTTTAAATACAAAATTTACTATTTCCCAAATTCAGTAAAGCAAAGTCAGAAAACATGTTGATTCTCAGGGTTGGCACAAGTCTGACCAAGGAGAAATCTTCCAAGAACTGTTTTCAGCTTAAGTTAGTTGAAGGGGAAAAAAGACCATTTATAATATACTACAGTGAACATGCTTCATATTTCTCAGCAAGATGATTTTGTAAAAGATTAAAAATGCTTCCAAATCCATGCTGATTTCCAGAATTTGCTCTATGAACCAAGATGGGATTATGTAATGGGTTCAAGTAAGTGAACAATCTCAGTTCACTTAGGAAAACTAAGCGAAGAAAACAGGGATTGTTTACTTAATTGGATACATTAGTTGCATTCTATAAATGTTTCACCCTGTGTCCTATGCCGATTGCAGGAGATAAGTCCAAAATAATTGTTTAAAAACAATTAGATATCCAAAATATATTTGCTTCTCCTATTTTCCCAAAG
Seq C2 exon
GAACATGGAGTCTCGGAGTTGTGACGTCCATTGCCAGCAAAGGTTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254707:ENST00000527443:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACTATGAACTACTCAAGGGA
R:
TGGCAATGGACGTCACAACTC
Band lengths:
351-920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains