HsaINT0119103 @ hg38
Intron Retention
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr11:7704565-7706421:-
Coord C1 exon
chr11:7706307-7706421
Coord A exon
chr11:7704675-7706306
Coord C2 exon
chr11:7704565-7704674
Length
1632 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTGTCTCGTTTTTTTCTCAGCTC
3' ss Score
8.24
Exon sequences
Seq C1 exon
TTTCAGGGAAAAACTATGAGTCTCAAAATGCTTATAAGCAGGAACAAGCTGATTTTACTACTAGGAATAGTCTTTTTTGAACGAGGTAAATCTGCAACTCTTTCGCTCCCCAAAG
Seq A exon
GTAAGTTTCAAATGAACTCTATAATTACCTTTGTCTGAACCTTTGCTGGCAATGGACGTCACAACTCCGAGACTCCATGTTCCTTTGGGAAAATAGGAGAAGCAAATATATTTTGGATATCTAATTGTTTTTAAACAATTATTTTGGACTTATCTCCTGCAATCGGCATAGGACACAGGGTGAAACATTTATAGAATGCAACTAATGTATCCAATTAAGTAAACAATCCCTGTTTTCTTCGCTTAGTTTTCCTAAGTGAACTGAGATTGTTCACTTACTTGAACCCATTACATAATCCCATCTTGGTTCATAGAGCAAATTCTGGAAATCAGCATGGATTTGGAAGCATTTTTAATCTTTTACAAAATCATCTTGCTGAGAAATATGAAGCATGTTCACTGTAGTATATTATAAATGGTCTTTTTTCCCCTTCAACTAACTTAAGCTGAAAACAGTTCTTGGAAGATTTCTCCTTGGTCAGACTTGTGCCAACCCTGAGAATCAACATGTTTTCTGACTTTGCTTTACTGAATTTGGGAAATAGTAAATTTTGTATTTAAAGTATTTATGACTCATTCAACTGAAACAGTTAGAAAATAAGCTTTTGTTCCAATGTCATCCTGGCACTGGGTTCAGGATCAAAACACTTACTGTTACATTCATGCTCTGCCATTATCCAGCTGTGTGTCTCCTTGATTCTCAGTTTTCTCATCTGCAATGTGGGGATAACAGTGCTTCATTTATAGGCATAGAGTGGGATTAAATGAGAAGCTGTATGAAAGAGCTTTGAATATTTTAACATGTTGATCTAAATAGCTATACTCTTAAGGATGTGTTCTCAAGAAAAGTCATTTGTTTGTCCATCCAGTGTTTCTAAGTGCTTACTTATGCCAAGAATTAAGCTAAACCTTAGAAATGCAGAGGTGAATAAGGCAAGTTTTTTCCCTTGAGTAGTTCATAGTCCGATGATAGAGGCAAATAATTCATTATCACAATTCTGCATGACAAGAACTATAAAAGGGGTGAAGAAAGCGTGCTACACAACACAAGGGAGAGGCAATCCCACTTTGAGGAAATCAAGGAAGACTTCCTGGTTGAGGTGATCTCCAAGCTGAGGAATAAGAATTACAGAATTTAGGTAGGCAATGAAGCATGGTGATTATGAAGCAAGGCTAGTTCTAATCCTCCTTCAAAATATGGAAAAGGATGACCTCCAGGAGGGACAGAAGATGTGCCATCCTTGAGTTACCAGGTGATGTTAAACATCTTTAATCTAGTCTACCTCTTTGCTGAGGAGTCAGAAAACCCATTGAGGGCAAATAAATAAAAACAACTTTTTCAGGGATAAAGTATTTTACATAAAGAGGGAGGAGTTTTTTCTTCTATTACCTAGCAAACCTCTATCCGAGTACCAACTTGTGAATCAGGACACTTCACTCCACTCTCCTTAAATGACCTGTCACTTTTCATCCCTCAAGAGAATTAAATCCAATAAAGATTTATTGATATCTGAATGTGTGCTGAGCACCATACACCATAGTCTCAGACTCAGTTTCATGGGTGAAATGGAGAAGATATTACCTCAATCCTAGAAGCTATCTAATCATTTAGTTTGTCTCGTTTTTTTCTCAG
Seq C2 exon
CTCCCAGTTGTGGGCAGAGTCTGGTTAAGGTACAGCCTTGGAATTATTTTAACATTTTCAGTCGCATTCTTGGAGGAAGCCAAGTGGAGAAGGGTTCCTATCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378:ENST00000533663:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(5.8=37.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGAAAAACTATGAGTCTCAA
R:
GGGATAGGAACCCTTCTCCACT
Band lengths:
217-1849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains