MmuINT0114159 @ mm10
Intron Retention
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:107798010-107801208:-
Coord C1 exon
chr7:107801092-107801208
Coord A exon
chr7:107798120-107801091
Coord C2 exon
chr7:107798010-107798119
Length
2972 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CTATCTTGTCTTTTTCCCAGATC
3' ss Score
9.88
Exon sequences
Seq C1 exon
CGTTTCAGGAGGAAGCGTTGAATCTCAACATGCCTATCAGCAAGGACAAGCTGATTTTAATATTAGGAATGGTCTGCTTGGAACAAGGTCATTCTGAAACCCTTTCCTCCATAAGAA
Seq A exon
GTAAGTTTCAAATTAAGTGTATAACTACTTTCGGTTTTGTTTGGTTGGTTGGTTTGTTTTGTTTTTTGTCTGGTGGGATCACTCTTGCAGCAAATCAGAGTAACGTCTCCACCTCTTGTTCCCTTGGGAATACAAGAGAAGCAAATTACTTCAGAAATGTAATTGGTTCTCAAAAATATTTCTCTGGAATTTTCTCCTGTGATAAGCATATGGAATTGAAATAATATGAAATAAATATAAACAGTTGTAGGGACCCTAAGTATTTTCTCCTAGTTTTACCAACTGACCTAGGATTGGCCACTTATTTGGAAGCATTACACAACCTGGTATTCTTCCATGGAGCAAATTCTGGGAGATCAGAACAGGTTTGGAAGTATTTAGAATCTTCAGGGAAATTATCCTAATAACCATATGATGCATGCTCACTGACATATAGTATAAATATTTTTGCATTGATTATAATGAGCTTAAAACAGTTGTTGGCAAGCTTGTCTGTAGTCGGACTTGTGCCAGCCCAGAGAATCAACATGTTTTCTGTCTCTGCTTCAGTGACTTCAGGTAATACTAAATTTTATGTCTAGCAGATTTATGACTCATCCATCTGAAGCAGCTGGAACAGCTTTTGATCATACATGCAATGGGCTCAGAATGAAACCACAATTGGTCGTTTCATGTTTTGCTGTTATTAGATACAGGTCTCATTGATTTTTAGTTTTCACGTCTTCTACATGAAGATGAAAGTCCTTTTTTCAGGCAATGTGTGGGGATTAAGAAATAAATTATATGGGAGAGCTTTATATGCTTTAAAGACGATCTAAGTAGCTCTCCTCTTAAGGATATAGTCCCAAGAAAAGTCATGTGCTCAATCAGCCATGCTTTCAGGTGTAACTTGTAAGCCAGGAACTGTGCTAGACCTTAGAAGTGTGTATGCATAGGACCCACATTCCTAAGTATCTCACTGAAGAATTCTGTAGTCCAATGAGGGAAGGAGACAATTTACTCTCATAACATAGCTTGGAAAGAACTGTTAAAGGGGAACAGGGAGTGGAGAGAAAGAGTGCTATATTGTGGGAGAGATCCAGGTCCCAGTTTGAAGAAATCAAGGAAGACTTTTCAGATGAAGTGGTAGTAAGCATTCAAAGAGCCATCTAGGTGAAGAAGCTCAGTGATAATGATGGAGAGTTTTATATGCACTCTTGGAAACTTCATAGGAAAAAATAACCTCAAGAGAAACAAATTCAACACAGAATTGCACAGTGTAATTAAACAAATTTAAACTCACCCCTTACTTAAGAAGTCAAAAGCCCACATAAATGCACACATATTGAAGTGTTGTCGGGGATGAAGGCTTTCTTGTTAAGTTATGTCTTCTCTTTACCTGACAGGCACCTGTCTTAACACCAGTGTGTGAATTAAAACTATCATCATACCACTGTTCCTGAACAATGTATTTTTTGCCCTATAGTAAATCTAATTAAATTTCTTCATATCTAACTGTGTGGCAGGCATGCATTAAAGACTCAGTCTCATAGGCAGAGCAGAGAGAGAGAGAGATAGACACAATTAAAAACTAGGACAGACTACAGCATCATCCATAAGTTAACTAAGCAACTCTGCATATGTGAATTTGTAATTCCATTGTGCCTATGCTAGATGTGATGTTACACACCTGTAATCCAAAAGCAGACTTCCAAAAGCAGAGGCAGGGAAAACATGAACTTAAGGTCATCCTGAGCTCCATATTGAAATGAAATTCTCTCACAAAGAAAAGGAAGGAAGGAAGAAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGTATCCCCATTGTTGTGGAGTCCACAGTCTACCTGGGTTGAAAGCCAGAAACAATCATCTTGGTACACAGTGAGTGTGAGTGTCGCAGGATACTACAAAGTACCTCTCTTTTTTTGAGACCAGAGAGCTCTGAAAGAAAAGAGACTGAATTCCTGACAACCCAGTGCCAATTATCCCTGCAGCAGTTAACCTTCACATTAGAAGTCAGTCCTTTGATGTTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCAGTCTGGATGGAACACAGGGCCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTACAACCCTATAGGAAGAACAACAATATGAACTAACCAGTACCCCCAGAGCTTGTGTCTCTAGTTGCATATGTAGCAGAGGATGGCCTAGTCAGCCATCAATGGGAGGAGAGGCCCTTGGTCTTGCAAAGATCATATGCCCAGTACAGGGGAATGCCAGGGCAAAGAAGCAGGAGTGGGTGGGTTGGGGAGCATGGCGGGGGAGGGTATAGGGGACTTTAAGGATAGTATTTGAAATGCAAATGAAGAAAATATCTAATAAAAAAATAGAAGTCAGTCCTTGGTCTGGGTAAAAATGGTTCAGTCAGCACTGCTTTCTATGCAAGCACAAAGAACTGGGTTTAATCCCCAGAAACCATTTTTTAAGGTGATACAGTAATGTGCATTCCCAAATGCACTTGTTGAGAGTCAGTGATGGGCAGATCCTTGGGGCTAGCTGGAGAGTTGCAAGCTAGTGAGAGATCTTGTCTCTAAAAACAATGGGCTAAGGAAGATAGTCAAAGTTGACCTCTCGCCTTAATATGCCCACACATGGATAAACACACACACACACACACACACACACACACACACACACACACACACACGCACCATAGAAGCTCTCTCTCTCAACAGCACACATCTTATGTGTGACAAAACTGAGTAATCTGTTCTTCAAAACACATCTAATCCCATCCATTAACTTAAAGCCGTATTGTAATTTCTTTACATATCCCATATACTGCATTTTGTTCTTGTTTGGAAAATTCTTCACTATATCTTAGTCCTAGAAATTAATCACTCAGTGTCTATCTTGTCTTTTTCCCAG
Seq C2 exon
ATCCTGACTGTGGGCAGAGTTTGGTTAAGCCCCAACCTCAGAATTACTTTAGCCTTTTCAGTCGCATTGTTGGAGGAAGCCAGGTGGAAAAGGGTTCCTATCCTTGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236:ENSMUST00000106755:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(5.8=37.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types