BtaINT0106480 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037921 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr15:45601855-45605361:+
Coord C1 exon
chr15:45601855-45601942
Coord A exon
chr15:45601943-45605251
Coord C2 exon
chr15:45605252-45605361
Length
3309 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTGTCTTTGCCCTCCCCAGTTT
3' ss Score
8.87
Exon sequences
Seq C1 exon
ATGCATATAAGCAAGAAGAAGCTCATTTTACTATTTGGAATAATCTTTTTGGAACAGAGTAAATCTGCAACTCTCTCTCTCCCCAAAG
Seq A exon
GTAAGTTCTAGGAAGTCTATCACTATCTTTGAAGAAATAACCTTTGCTGGCAGTGGGTATTACAGTTTCACTCCGTATTCCTTTGGGAGAACAGGAGAAGCAAATATATTCTGGAGATCTAATTAGATTTCATGTAATTAATTTGGACTTCTCTCCTGCAATCATCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTATTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCAGACATGACTGAAGCAACTTAGCAGCAGCAGCAGCAGCCTGCAATCATCATATTAAAGTGAATAGAAAATTTATGGAATACAAAATACAACTTGGATAAGTTGCACTGATCTGGAAAAGACTGGAATTATTCATTTATTTGAACACATTCTACAATCCCATCTCCTTTAATGGAACAAATTCGAGAAATGAGCATAAATTTGGAAGAATTTGTAATCTTTTAAAAAATTATACTTTTTACTATAGTTTGGTCTTCCCTGGTGGCTCAGCTGGTAAAGAATCCACCTGCAATGCAGGAGACCTGGGTTCAATCCCTGGATTGGGAAGATCCCTTGGAGAAGGGAAAGGCTACCCACTCCAGTATTTTGGCCTGGAGAATTCCACGGAGCGTATAGTCCATAGAGTCACAAAGAGTCAGACACAACTGAGCAACTTGCACTTACTGTACTTTATACAATATACTGCTATAAATAGAAGGTGTGAAGCCTGTTTACTGCAGTATATTTTGTATATAAATGATGTTTTTTTCTTCAAGTAACATAAGCTAAGAACAGTTCTTGGCAATCTTCTTCATAGTCAGATTTGTACTTCAAGAATCATCGTATTTTTTTATTTTTCCTTCAATGGGTTCAGGAAATACTAAATGTTATGTATACAAAGGTATTTATGATTCAGTTAACTGAAACAGCTAGAAAATAAGCTTTTGATTCAGCATTATGCCTGCTCTGGATTCAGAATCAAAAGACAGGGTTACATCCGTGCTTTGTCATTAATTAACTGTGCATCTCTTTGATTCTTCATTTTCCCATCTGTACTGTGGGGATAATAGTGCTTGATTTATAGTCAGAGAATGGAAATTAAATGAGAAGCTATTTGAAAAAGTTTTGGATATTTTAACATATTGATCTAAATAGCTATGCTTTCACAGATATTTTCTCAAGAAAAGTCATTTGTCCATCCTTCCAATTTTTCTAAGTGTCCACTGTATGCTAGGAATGTGCTAAGTGTTGGAAATACAGAGATGAATAAAACAGATTTTTTTCATTTTCATAGTAAATGAGGATACAGGAAAAGAATTTTCTATCCCACTATTTCATGGTGAAAACTATAAAAAGGGAGAGGAAAGGGTTTTACACAGGAGAGACACTTAAGACAGTTTGAGGAAATCAAGGAAGACGCCTCAATTGAAGTGATCTCCAAGCTGAAGAATAGGGATTAGAGGATTCAACTAGGTAAAGAAGTGGGGCAAATGTGAGGCAGGGCATTCAGGCCTTCCAAGAGAACATGTGGAGAAGAATGACCTGCAGTAGGGACAGAAGGTGGATCTTCCCTGATTACCAAGCAGAATGATAAGTACATGGAGGTTCACTTATACTGTTCTCTCTACTTTTGGAGAGATTTTCACTTTTCCATCACAAAAAGGTAAAAGCATAAACAACCAAGTAGAAATAGGAGCAAAGATATAAAACTTCAATACATGGAAAAATAAATTTTTCCATGTAAATAAATTTGAAAAATTTGATGTCACCGATAATTAGGCAAACTAAAAATTAACAATGCATTTTAAGCATCTTAATCTAGTCCATCTCTTAGCTGAGGAGTCCAAAATAAAACAAACAAAAAAAGGCAGAACAAACATTTGAGAGTAACTAAATGCAGATTTTTCAAGGATAAAATGTTTTTTCCATAAAAAGGAAAGGGTTCTTTTTCCCATTACCTAGTAATCCTTCTCCAGAGAAGGCAATGGGAACCCACTCCAGTACTCTTGCCTGGAGAATCCCAAGGCTGGAGGAGCCTTGTAGGCTGCAGTCCATGGGGTCGAAAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGCGAAGCCTGGTGGGCTACCATCTCTGGGGTCGCACAGAGTCGGTCGGACACGACTGAAGCAACTTAGCGGCAGCAGCAGTAACCCTTCTACCCTAACACCATTCTAGTATGTGAATTAACGTACCGTCTCCTTTCTAGTCCACTATCATTAAACAATCTGTTACTTTCCACTCTTAGAATTAAATCTAATATTTGACTGTGCCAGGCACTACTGACCATGATCAGAGACTTCATCTCCTGGGTCAAGCAGAGGGAAAGATGCTAACACAAATACAGTGAAAGGCAGACTACAGGGGCTTCTCTGGTGGCTCAGTGGTAAAGAATCTGCCTGCCAATACAGGAGACATGGATTTGATCCCTGATCCAGGAAGATCCCACAGGCCATGGAGCAACTAGGCCCATGCGCCACATCTACTGAGCCTCTGCTCCGGAGTCTGGAAGACACAACCACTGAGCCCATGTGCCCCAGCTACTGAAGCCTGCAAGCCCTAGAGCCCGTGCTCCACAACAAGAGAACCATTGCAATGAGAAGTCTGTGCACTGCAACCAGAGATACAGTGCCCCGCTTGTCGCAACTAGAGAAAAGCCCACAGAGCAGCAAAGACCCAGCACAGCCAAAGAAATATATAAATAAATAAAATTACTTTTTAAAAAAGTTTAAAGCAAATTGTAGTATCACCCATTCAACCAATTAATTGAGCAACATCTGGGCATCAGTCTAGTGGATTTGAAAGAATAACCACAATGGAATGTAATAAGTGACACAGAAGCACAGAGCGCTCTGAGGAGCCTGTAAGGGGCCAAATGGCTTAGAATCAAAAGGGGACTGCATTCGTGCTAACCCGGTGGAGATCTACCTCTAAGGCCCTAAATCTTCATATCTGAAAAGTAGATCTTCACAATATGCAGGTTCTATGTGAAAAAGCTGAACAATTGCTTATACTGCAAATCACAGTAAATCCCACAAGTAATTTAAAGCCATTTTGTACTATTTCTACCTGCTCTATGTCTTCCAGTATTTCTTGCTCGGAAGAGTTTCCTATATACCTCAGAACTAAGAGCTATCTAATCTCCAAATTTTTGTCTTTGCCCTCCCCAG
Seq C2 exon
TTTCCACTTGTGGGCAGAGTCCAGTGAAGTCACAGCCTTTGAATTACCTGAACATTTTCAGTCGCATCGTTGGGGGAAGGCAAGTGGCAAAGGGTTCCTACCCTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037921:ENSBTAT00000063712:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(5.8=37.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development