HsaINT1034155 @ hg38
Intron Retention
Gene
ENSG00000229190 | RP11-390B4.3
Description
NA
Coordinates
chr10:17695709-17696703:-
Coord C1 exon
chr10:17696603-17696703
Coord A exon
chr10:17696121-17696602
Coord C2 exon
chr10:17695709-17696120
Length
482 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGTCTTCCCAAAATTCACAGGTT
3' ss Score
7.89
Exon sequences
Seq C1 exon
TATTCAACTTACACTATTACAAAATTTGAATCTCACAATAACCCACTGAAAAAGCCAATGAATCTTCCTTTATTACAAAAGAAGAAGAAGCCTCAGAAAAG
Seq A exon
GTAAGAAGCTATTCAACACACAGTTGTTTATCTTCTTGACTGCCAATGCATGCTCTGCAGTTATGGACTCTCTCCCAAAAAAAGAGGCACCAATACGAAAAAATTGTCAGCTTCAGATGGTTCACAGGCTCCAGAGTAAGAAGTCTTTGTAATGAGCTATAAAGACAGGCTCTTATTTTCAGTCTCCATTCCTAAATCATTGCTCTTTCTGGTACACAGCAGCAAGGTTTTTTTTTTCTCCCAACAGAACGAATGTCAAAGATGACACTGTTCACAGTGCAAAACATTCGCAAAGAGTACACTCCTAGGTGTAAACTCTAGTATATGGAAAGCTAGCAAGCACTCAATACATGTTTTTGAAAGAACAGACGTAAGGTTTTGGGCAATTTCCAGCTAACCAGCTCAAACTTTATTTTCTTCCACTCAAAAAAAAAAAAATGTTAAAATATGTCTGAATGTTTGTGTCTTCCCAAAATTCACAG
Seq C2 exon
GTTGAAATCCTAACCCCCAAAGCAATGGTATCAGAAGGTGGGGACTTTGGAAAGCGATTAAGTCATGAATGAGATTAGCGACCTTATAAAAGAGACCCCAGAGGGCTCATTTGCCCCTGCTGCCATGGGAGGACACAGCAAAATGACAGCCTTCTACAAACCAGAAAGTGGGCCTTCAACACACAGTCAATCTGTCTGTGAGAAATAAATTCCTGTTGTTTATAAACCAGTTAGTCTACGGTAGTTTGTTACGGCAGCCCAAATGGACTAAGGCAGTAAGTAAGAGAGACACTACAGGAAGAACTTTAAATCAATTTGAACTGATTTTTAAAAAACACCTGCAAATTTTAATACTTCATTATCAGTAACAAGCATCAGTAACAATTCATTTTCAAGTAAAACATCACAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229190:ENST00000445235:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAATAACCCACTGAAAAAGCCA
R:
ACTGCCTTAGTCCATTTGGGC
Band lengths:
345-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains