HsaEX0062211 @ hg38
Exon Skipping
Gene
ENSG00000136738 | STAM
Description
signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
Coordinates
chr10:17688027-17704518:+
Coord C1 exon
chr10:17688027-17688173
Coord A exon
chr10:17693222-17693312
Coord C2 exon
chr10:17704431-17704518
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGTTCCTCTTTTTTGTTAGGCT
3' ss Score
8.09
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGTCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGATCCACAGCTTAGTCTAATATCAGCAATGATTAAGAACCTTAAGGAACAAGGAGTTACGTTCCCAGCTATTGGCTCTCAG
Seq A exon
GCTGCAGAACAAGCAAAAGCAAGCCCAGCTCTTGTAGCCAAGGATCCTGGTACTGTGGCTAACAAAAAAGAAGAAGAAGATTTAGCAAAAG
Seq C2 exon
GATAAAATGGACCAGTTGCTACAGATGCTGCAAAGTACAGACCCCAGTGATGATCAGCCAGACCTACCAGAGCTGCTTCATCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136738_MULTIEX1-9/18=7-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.532 C2=0.900
Domain overlap (PFAM):
C1:
PF0079014=VHS=PD(28.9=79.6)
A:
PF0280915=UIM=PU(50.0=29.0)
C2:
NO
Main Skipping Isoform:
ENST00000377524fB27061
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCTTATGGTTGAATGGACA
R:
GCTGATCATCACTGGGGTCTG
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development