DreEX6027581 @ danRer10
Exon Skipping
Gene
ENSDARG00000002127 | stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:ZFIN;Acc:ZDB-GENE-031118-123]
Coordinates
chr2:31460069-31462586:+
Coord C1 exon
chr2:31460069-31460215
Coord A exon
chr2:31462209-31462299
Coord C2 exon
chr2:31462388-31462586
Length
91 bp
Sequences
Splice sites
3' ss Seq
AAGTTTAATTTTTTGATTAGGCA
3' ss Score
3.4
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGTCACCCAAAAGTATGTGAGAAGCTAAAGGCTTTGATGGTGGAATGGGCCGAGGATTTCCGCAACGACCCTCAGCTCAGCCTGATCTCTGCAATGATTAAGAACCTCCGAGAGCAGGGCGTCATCTTCCCTGCCGTGGGCTCTCAG
Seq A exon
GCAGCAGAGCAAGCTAAAGCCAGTCCCGCATTGGTAGCTAAAGATCCTGCAACATCAACAAACAAGAAGGAAGAAGAAGACCTTGCTAAAG
Seq C2 exon
CTATTGAACTGTCTCTGAAGGACCAGCGGCATCAGCAGCCTCAGGTGTCTCTGTCTGGCCTCTACCCGAGCACCAGCAGCCTCCTGACCTCCCACAAGACAGACGGCAGAAAGGTCAGGGCTATCTATGACTTTGAAGCAGCCGAAGACAACGAGCTCACTTTTAAATCAGGCGAGATCATCACTATCCTGGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002127-'9-8,'9-6,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.742 C2=0.194
Domain overlap (PFAM):
C1:
PF0079014=VHS=PD(28.7=79.6),PF136461=HEAT_2=PD(19.3=42.9)
A:
PF0280915=UIM=PU(50.0=29.0)
C2:
PF0280915=UIM=PD(44.4=11.9),PF0001823=SH3_1=PU(58.7=40.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAACCTCCGAGAGCAGGG
R:
CTGACCTTTCTGCCGTCTGTC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]