RnoEX0086629 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81235292-81238908:+
Coord C1 exon
chr17:81235292-81235438
Coord A exon
chr17:81238278-81238368
Coord C2 exon
chr17:81238716-81238908
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTCTGTGTTTGTTAGGCT
3' ss Score
9.05
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGCCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGACCCACAGCTAAGTCTGATATCGGCAATGATTAAGAACCTCAAGGAACAGGGTGTAACATTCCCAGCCATCGGCTCTCAG
Seq A exon
GCTGCAGAACAAGCGAAAGCAAGCCCGGCTCTGGTAGCCAAGGACCCTGGCACTGTGGCTACCAAAAAGGAAGAAGAAGATTTAGCCAAAG
Seq C2 exon
CTATTGAGTTGTCGCTCAAGGAGCAAAGGCAGCAGGCAGCCCCCCTCTCCACGTTGTACCCAAGCACATCCAGTCTCCTCACTAACCACCAACATGAAGGCAGGAAAGTCCGCGCTGTGTATGACTTTGAGGCTGCAGAGGACAATGAGCTCACCTTTAAAGCTGGAGAGGTCATCACAGTGCTTGACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817-'12-16,'12-13,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.581 C2=0.400
Domain overlap (PFAM):
C1:
PF0079014=VHS=PD(28.9=79.6)
A:
PF0280915=UIM=PU(50.0=29.0)
C2:
PF0280915=UIM=PD(44.4=12.3),PF0001823=SH3_1=PU(58.7=41.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTGTAACATTCCCAGCC
R:
GTCCTCTGCAGCCTCAAAGTC
Band lengths:
176-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]