GgaEX6018774 @ galGal3
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
NA
Coordinates
chr2:19581340-19582518:-
Coord C1 exon
chr2:19582372-19582518
Coord A exon
chr2:19581789-19581879
Coord C2 exon
chr2:19581340-19581532
Length
91 bp
Sequences
Splice sites
3' ss Seq
CATCTTTTATTTTTGGCTAGGCT
3' ss Score
6.43
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTCATCCAAAAGTTTGTGAAAAGCTGAAAGCCCTTATGGTGGAATGGACTGATGAATTCAAAAATGACCCACAGCTTAGTTTAATATCTGCTATGATAAAAAATCTGAAGGAGCAAGGAGTTACTTTCCCAGCTATTGGTTCACAG
Seq A exon
GCTGCTGAGCAGGCAAAAGCAAGTCCAGCCCTCGTTGCCAAAGATCCTGGTGCAGTAGCTAACAAGAAAGAAGAAGAAGATTTAGCTAAAG
Seq C2 exon
CAATTGAACTGTCACTAAAAGAGCAAAGACAACAGCAAACAACACTTTCCAGTTTGTATCCGAGCACCTCAAGCCTTTTAACAAATCACAAACATGAGGGCCGAAAGGTTCGTGCAATCTATGATTTCGAGGCTGCTGAAGACAACGAATTAACCTTTAAAGCTGGAGAACTTATAACTATCCTCGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.355 C2=0.308
Domain overlap (PFAM):
C1:
PF0079014=VHS=PD(28.9=79.6)
A:
PF0280915=UIM=PU(50.0=29.0)
C2:
PF0280915=UIM=PD(44.4=12.3),PF0001823=SH3_1=PU(58.7=41.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGAGTTACTTTCCCAGCT
R:
GTTGTCTTCAGCAGCCTCGAA
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]