MmuEX6099044 @ mm9
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14039016-14050798:+
Coord C1 exon
chr2:14039016-14039162
Coord A exon
chr2:14050173-14050263
Coord C2 exon
chr2:14050606-14050798
Length
91 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTCTCTGTGTGTTAGGCT
3' ss Score
9.49
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGATCCACAGCTTAGTCTGATATCGGCAATGATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAG
Seq A exon
GCTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTAGCCAAGGACCCTGGGACTGTGGCTACCAAAAAGGAAGAAGAAGATTTAGCCAAAG
Seq C2 exon
CTATTGAGTTGTCCCTGAAGGAGCAAAGGCAGCAGTCAGCCCCCGTGTCCACGCTGTACCCCAGCACATCTAACCTCCTCACTAACCACCAGCACGAAGGCAGGAAAGTCCGCGCCGTGTACGATTTTGAAGCCGCTGAGGATAATGAGCTTACCTTTAAAGCTGGAGAAATCATTACAGTCCTTGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'9-10,'9-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.581 C2=0.498
Domain overlap (PFAM):
C1:
PF0079014=VHS=PD(28.9=79.6),PF136461=HEAT_2=PD(20.7=46.9)
A:
PF0280915=UIM=PU(50.0=29.0)
C2:
PF0280915=UIM=PD(44.4=12.3),PF0001823=SH3_1=PU(58.7=41.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGTGTAACATTCCCAGCT
R:
GCTTCAAAATCGTACACGGCG
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: