HsaEX6087734 @ hg38
Exon Skipping
Gene
ENSG00000136738 | STAM
Description
signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
Coordinates
chr10:17700191-17715914:+
Coord C1 exon
chr10:17700191-17700279
Coord A exon
chr10:17704431-17704518
Coord C2 exon
chr10:17714543-17715914
Length
88 bp
Sequences
Splice sites
3' ss Seq
TAACTACTTAATTCCTGTAGGAT
3' ss Score
7.17
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TTAAAACAGAGAAGAAGACGGTACAATTTAGTGATGATGTTCAGGTAGAGACAATAGAACCAGAGCCGGAACCAGCCTTTATTGATGAA
Seq A exon
GATAAAATGGACCAGTTGCTACAGATGCTGCAAAGTACAGACCCCAGTGATGATCAGCCAGACCTACCAGAGCTGCTTCATCTTGAAG
Seq C2 exon
TACAATGGTCAGTTCCGTTCAAGGAAACACATATCCCAGCCAGGCGCCAGTATATAGTCCTCCTCCTGCCGCTACTGCTGCTGCTGCAACTGCCGATGTCACTCTGTACCAGAATGCAGGACCTAATATGCCCCAGGTGCCAAACTATAACTTAACATCATCAACTCTGCCTCAGCCCGGAGGCAGCCAACAGCCACCTCAGCCACAGCAACCATATTCTCAGAAGGCTCTGCTATAGGACCCGGTGTTCCTCTTGGTGGCAGATACCTGCTAAATGCCACTGACAATGTTATGAGATTCATTACTATCTTAAGATGTGTTTATCCTCAGCTTATAGGAATCTCTCCAGGTCAACAGGTTCAAATATTCAAGAAGGTAGAACTCTCCTCAATTTACACTGACTTTTTAGAGGTTCTTCCCCCCCCGCCCCTGCAGAGGAATGAAACTACTTACAACATTTAATTCCTTTCATAATATGAAAGAATTGATACAAGGCTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136738_MULTIEX1-14/18=13-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.832 A=0.900 C2=0.948
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGAACCAGAGCCGGAACCA
R:
TGGGGCATATTAGGTCCTGCA
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains