HsaEX6087733 @ hg38
Exon Skipping
Gene
ENSG00000136738 | STAM
Description
signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
Coordinates
chr10:17704970-17715914:+
Coord C1 exon
chr10:17704970-17705024
Coord A exon
chr10:17705588-17705701
Coord C2 exon
chr10:17714543-17715914
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATTATTGTGTCATGTTTCAGAAA
3' ss Score
8.23
5' ss Seq
TCAGCCATA
5' ss Score
-24.58
Exon sequences
Seq C1 exon
CAATGTGTCACCAGATGGGACCTCTCATTGATGAAAAGCTGGAAGATATTGATAG
Seq A exon
AAAACATTCAGAACTCTCAGAACTTAATGTGAAAGTGATGGAGGCCCTTTCCTTATATACCAAGTTAATGAACGAAGATCCGATGTATTCCATGTATGCAAAGTTACAGAATCA
Seq C2 exon
TACAATGGTCAGTTCCGTTCAAGGAAACACATATCCCAGCCAGGCGCCAGTATATAGTCCTCCTCCTGCCGCTACTGCTGCTGCTGCAACTGCCGATGTCACTCTGTACCAGAATGCAGGACCTAATATGCCCCAGGTGCCAAACTATAACTTAACATCATCAACTCTGCCTCAGCCCGGAGGCAGCCAACAGCCACCTCAGCCACAGCAACCATATTCTCAGAAGGCTCTGCTATAGGACCCGGTGTTCCTCTTGGTGGCAGATACCTGCTAAATGCCACTGACAATGTTATGAGATTCATTACTATCTTAAGATGTGTTTATCCTCAGCTTATAGGAATCTCTCCAGGTCAACAGGTTCAAATATTCAAGAAGGTAGAACTCTCCTCAATTTACACTGACTTTTTAGAGGTTCTTCCCCCCCCGCCCCTGCAGAGGAATGAAACTACTTACAACATTTAATTCCTTTCATAATATGAAAGAATTGATACAAGGCTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136738_MULTIEX1-16/18=15-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.173 C2=0.948
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCAGATGGGACCTCTCA
R:
CTGAGGTGGCTGTTGGCTG
Band lengths:
251-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains