HsaEX1039208 @ hg38
Exon Skipping
Gene
ENSG00000136738 | STAM
Description
signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
Coordinates
chr10:17708776-17715914:+
Coord C1 exon
chr10:17708776-17708951
Coord A exon
chr10:17709402-17709450
Coord C2 exon
chr10:17714543-17715914
Length
49 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGTTTTGGAATTTAGTTT
3' ss Score
6.09
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGTATGCAGGGCCTCCTCCAAGTGGTGCCTACCTGGTTGCAGGGAACGCGCAGATGAGCCACCTCCAGAGCTACAGTCTTCCCCCGGAGCAGCTGTCTTCTCTCAGCCAGGCAGTGGTCCCACCATCCGCAAACCCAGCCCTTCCTAGTCAGCAGACTCAGGCCGCTTACCCAAA
Seq A exon
TTTATATTATATCAAGGTACCCCATTTGAAACAAGAAGATAATAAGAAG
Seq C2 exon
TACAATGGTCAGTTCCGTTCAAGGAAACACATATCCCAGCCAGGCGCCAGTATATAGTCCTCCTCCTGCCGCTACTGCTGCTGCTGCAACTGCCGATGTCACTCTGTACCAGAATGCAGGACCTAATATGCCCCAGGTGCCAAACTATAACTTAACATCATCAACTCTGCCTCAGCCCGGAGGCAGCCAACAGCCACCTCAGCCACAGCAACCATATTCTCAGAAGGCTCTGCTATAGGACCCGGTGTTCCTCTTGGTGGCAGATACCTGCTAAATGCCACTGACAATGTTATGAGATTCATTACTATCTTAAGATGTGTTTATCCTCAGCTTATAGGAATCTCTCCAGGTCAACAGGTTCAAATATTCAAGAAGGTAGAACTCTCCTCAATTTACACTGACTTTTTAGAGGTTCTTCCCCCCCCGCCCCTGCAGAGGAATGAAACTACTTACAACATTTAATTCCTTTCATAATATGAAAGAATTGATACAAGGCTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136738_MULTIEX1-18/18=17-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=0.176 C2=0.948
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000377524fB27060
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCTTCCTAGTCAGCAGA
R:
ACAGAGTGACATCGGCAGTTG
Band lengths:
147-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains