HsaEX6087732 @ hg38
Exon Skipping
Gene
ENSG00000136738 | STAM
Description
signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
Coordinates
chr10:17705588-17715914:+
Coord C1 exon
chr10:17705588-17705701
Coord A exon
chr10:17708776-17708951
Coord C2 exon
chr10:17714543-17715914
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTAACCATCGCAGGTG
3' ss Score
9.28
5' ss Seq
AAAGTAATT
5' ss Score
3.64
Exon sequences
Seq C1 exon
AAAACATTCAGAACTCTCAGAACTTAATGTGAAAGTGATGGAGGCCCTTTCCTTATATACCAAGTTAATGAACGAAGATCCGATGTATTCCATGTATGCAAAGTTACAGAATCA
Seq A exon
GTGTATGCAGGGCCTCCTCCAAGTGGTGCCTACCTGGTTGCAGGGAACGCGCAGATGAGCCACCTCCAGAGCTACAGTCTTCCCCCGGAGCAGCTGTCTTCTCTCAGCCAGGCAGTGGTCCCACCATCCGCAAACCCAGCCCTTCCTAGTCAGCAGACTCAGGCCGCTTACCCAAA
Seq C2 exon
TACAATGGTCAGTTCCGTTCAAGGAAACACATATCCCAGCCAGGCGCCAGTATATAGTCCTCCTCCTGCCGCTACTGCTGCTGCTGCAACTGCCGATGTCACTCTGTACCAGAATGCAGGACCTAATATGCCCCAGGTGCCAAACTATAACTTAACATCATCAACTCTGCCTCAGCCCGGAGGCAGCCAACAGCCACCTCAGCCACAGCAACCATATTCTCAGAAGGCTCTGCTATAGGACCCGGTGTTCCTCTTGGTGGCAGATACCTGCTAAATGCCACTGACAATGTTATGAGATTCATTACTATCTTAAGATGTGTTTATCCTCAGCTTATAGGAATCTCTCCAGGTCAACAGGTTCAAATATTCAAGAAGGTAGAACTCTCCTCAATTTACACTGACTTTTTAGAGGTTCTTCCCCCCCCGCCCCTGCAGAGGAATGAAACTACTTACAACATTTAATTCCTTTCATAATATGAAAGAATTGATACAAGGCTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136738_MULTIEX1-17/18=16-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=0.525 C2=0.948
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGGAGGCCCTTTCCTT
R:
GGCTGAGGCAGAGTTGATGAT
Band lengths:
258-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains