GgaEX1055868 @ galGal3
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
NA
Coordinates
chr2:19572956-19576274:-
Coord C1 exon
chr2:19576121-19576274
Coord A exon
chr2:19574188-19574363
Coord C2 exon
chr2:19572956-19573434
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATTTAACTTTCTAGGTT
3' ss Score
10.42
5' ss Seq
AAAGTAATT
5' ss Score
3.64
Exon sequences
Seq C1 exon
GAAACATTCAGAACTTTCAGAGCTCAATGTTAAAGCAATGGAGGCTCTTTCTTTGTATAACAAGTTGATGAATGAAGACCCAATGTATTCCATGTATGCAAAGCTACAAAACCAACAGTATTATATGCAGTCATCGGGTGTTTCTGGCTCTCAG
Seq A exon
GTTTATCCAGGGCAACCTCAAGGTAACGCATATTTGGTGGCAGGGAGTGCACAGATGGGCCACATTCAAGGCTATAATCTTCCTCCCGAACAACTCTCTTCTCTCAGCCAAGGCACAGTTACTCCATCTGCCAGCTCAGTACTACCTGGTCAGCCTGCACAAACGTCTTACACAAA
Seq C2 exon
CGCAATGGTTGGCTCTGTTGCTGGAAATACTTACTCTAACCAGGCTTCGGTGTATAGTCCACCACCTGCTGCTGTTGATGTTGCTGCTTATCAGAATGCTGGAACTAATATGTCCCAGGTGCCAAACTATAACTTAGCATCTACACCTCTGCCACAGACAGCAGGCAGCCAACAAGCACCTCCACAGCAACCACAGCCTCCACCTCCTCAACAGCCCCAGCATAGCTATTCACAGAAGGCTCTGCTATAGGATCCGGGACTTCTGATTCCTAATCTTCTTTAACCTCTGCTAAAGGCAGTTGACAATGCTTTGAGTTTCTTCCTTTAATCTCTTAAACTTTGTTTATCTTCAGCTTAATAAGAATCTATCTTGGTGAACAAGTTCAATTTGCACTGACTTTTTAGGATTTTTTTTTTTTTTAATTTTGCAGAGGAATGGATATATCTAGGACACTTAATTCCTTTTAAAACGGCTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'12-14,'12-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.644 C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGGGTGTTTCTGGCTCTC
R:
TAGCTATGCTGGGGCTGTTGA
Band lengths:
251-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]