MmuEX6099038 @ mm10
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14138956-14149634:+
Coord C1 exon
chr2:14138956-14139109
Coord A exon
chr2:14141702-14141877
Coord C2 exon
chr2:14146219-14149634
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTCCGTATCATCTCTTATAGGTA
3' ss Score
9.13
5' ss Seq
GAAGTAATT
5' ss Score
3.7
Exon sequences
Seq C1 exon
AAAACATTCAGAACTGTCAGAACTAAACGTGAAGGTGATGGAAGCTCTCTCACTGTATACGAAGTTAATGAATGAAGACCCAATGTACTCTATGTATGCAAAATTACAGAGTCAGCAGTACTATCTGCAGTCGTCGGCTGTCTCTGCTTCCCAG
Seq A exon
GTATATCCAGGGCCTGCGCAGAGCGGTACCTACCTGGTTGCAGGGAGTGCACAGATGACCCATCTGCAGAGCTACAGCCTTCCCCCAGAGCAGCTGTCTTCTATCAGCCAAGGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCTAGTCAGCAGACCCAGGCTTCTTACCCGAA
Seq C2 exon
TGCAATGGTTAGTTCTGTTCAAGGAAATTCGTATCCTAGCCAGGCTTCAATATATAGTCCTCCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGTAGTACCTGTTCCTGTACCTGCTGATGTCACCATATACCAGAATGCAGGACCTACTATGTCCCAGGTGCCAAACTATACTTTAACATCATCAACCCTGCCTCAAACAGGAGGCAGCCAACAGCCACCTCAGCCACAGCAAGCATATTCTCAGAAGGCTCTGCTATAGGACTTGATGTTCCTCTTGGTGGCATATTTCCGCTGAATGCCATTGACAATGTTAGGAGATTCATTAACATCCTAAAATTTGCTTTTCCTCAGCTTATAAGAGTCTATCTTGGTCAAGTTCAAATACTCAAGAAGGTAGAACTGTCTTCAATTTGCACTGAATTTTTAGAGGAATGCCTCTACCCTGAGGAATGAAACTACTTACAACATTTATTTCCTTTCATAATATGAAGAATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'32-33,'32-31,37-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.408 C2=0.433
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAAGGTGATGGAAGCTC
R:
TCAGCAGGTACAGGAACAGGT
Band lengths:
248-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types