RnoEX0086635 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81248699-81255808:+
Coord C1 exon
chr17:81248699-81248852
Coord A exon
chr17:81250239-81250414
Coord C2 exon
chr17:81254319-81255808
Length
176 bp
Sequences
Splice sites
3' ss Seq
GTCCGTGTCGTCTCTTGTAGGTA
3' ss Score
11.09
5' ss Seq
GAAGTAATT
5' ss Score
3.7
Exon sequences
Seq C1 exon
AAAACACTCAGAACTCTCAGAACTGAATGTGAAGGTGATGGAGGCTCTCTCACTGTATACGAAGCTAATGAATGAAGACCCAGTGTACTCTGTGTACGCCAAGTCCCAGAGTCAGCAGTACTATGTGCAGGCCTCTGGTGTGTCCGCTCCCCAG
Seq A exon
GTATACCCAGGGCCTGCTCAGAGCGGAGCCTATCTGGTTGCAGGGAATGCCCAGATGACCCATCTCCAGAGCTACAGCCTTCCCCCGGAGCAGCTGGCTTCCATCAGCCAAGGAGCAGTTCCTCCCTCTGCAACCCCAGCCCTTCCTAATCAGCAGGCCCAGGCTTCTTACCCGAA
Seq C2 exon
TGCAATGGTTAGTTCTGTTCAAGGAAATTCGTATCCCAGCCAGGCTTCAATATACAGTCCTGCTGCTGCTGCTGCCGCTGTCGCTGTCACTGCAGTGCCTGTGCCTGCTGATGTCACCATCTACCAGAATCCAGGACCTAACATGTCCCAGGTGCCAAACTATACCTTAACGTCATCGACCCTGCCTCACACAGGAGGCAGCCAACAGCCACCTCAGCCACAGCAAGCATATTCTCAGAAGGCTCTGCTATAGGACTTGATGCTGCTCTGGGTGGCCTATTTCTGCTGAGTGCCACTGACAGTGTTAGGAAATTCATTAACATCCTAAGATTTGTTTTCCTCAGCTTGTGAGAGTCTATCTGTGGTGCAAGTTCAAATACTCAAGAAGGTAGAACTGCTTCAGTTTGCACTGACTTTTTAGAGGAATGCTCCTCCCCCGAGGAATGAAACTACTTACAACATTTATTTCCTTTCATGATATGAAGAATTGTTACAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.458 C2=0.536
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGCCAAGTCCCAGAGTCAG
R:
GCAGGGTCGATGACGTTAAGG
Band lengths:
245-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]