HsaEX6087732 @ hg19
Exon Skipping
Gene
ENSG00000136738 | STAM
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:HGNC Symbol;Acc:11357]
Coordinates
chr10:17747587-17757913:+
Coord C1 exon
chr10:17747587-17747740
Coord A exon
chr10:17750775-17750950
Coord C2 exon
chr10:17756542-17757913
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTAACCATCGCAGGTG
3' ss Score
9.28
5' ss Seq
AAAGTAATT
5' ss Score
3.64
Exon sequences
Seq C1 exon
AAAACATTCAGAACTCTCAGAACTTAATGTGAAAGTGATGGAGGCCCTTTCCTTATATACCAAGTTAATGAACGAAGATCCGATGTATTCCATGTATGCAAAGTTACAGAATCAGCCATATTATATGCAGTCATCTGGTGTTTCTGGTTCTCAG
Seq A exon
GTGTATGCAGGGCCTCCTCCAAGTGGTGCCTACCTGGTTGCAGGGAACGCGCAGATGAGCCACCTCCAGAGCTACAGTCTTCCCCCGGAGCAGCTGTCTTCTCTCAGCCAGGCAGTGGTCCCACCATCCGCAAACCCAGCCCTTCCTAGTCAGCAGACTCAGGCCGCTTACCCAAA
Seq C2 exon
TACAATGGTCAGTTCCGTTCAAGGAAACACATATCCCAGCCAGGCGCCAGTATATAGTCCTCCTCCTGCCGCTACTGCTGCTGCTGCAACTGCCGATGTCACTCTGTACCAGAATGCAGGACCTAATATGCCCCAGGTGCCAAACTATAACTTAACATCATCAACTCTGCCTCAGCCCGGAGGCAGCCAACAGCCACCTCAGCCACAGCAACCATATTCTCAGAAGGCTCTGCTATAGGACCCGGTGTTCCTCTTGGTGGCAGATACCTGCTAAATGCCACTGACAATGTTATGAGATTCATTACTATCTTAAGATGTGTTTATCCTCAGCTTATAGGAATCTCTCCAGGTCAACAGGTTCAAATATTCAAGAAGGTAGAACTCTCCTCAATTTACACTGACTTTTTAGAGGTTCTTCCCCCCCCGCCCCTGCAGAGGAATGAAACTACTTACAACATTTAATTCCTTTCATAATATGAAAGAATTGATACAAGGCTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136738-'21-20,'21-17,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=0.644 C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGGAGGCCCTTTCCTT
R:
TGGGGCATATTAGGTCCTGCA
Band lengths:
256-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)