MmuEX6099039 @ mm9
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14059763-14063504:+
Coord C1 exon
chr2:14059763-14059817
Coord A exon
chr2:14060583-14060736
Coord C2 exon
chr2:14063329-14063504
Length
154 bp
Sequences
Splice sites
3' ss Seq
AATTATGTGTAACCTTTCAGAAA
3' ss Score
6.7
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
CAATGTGTCACCAGATGGGACCTCTCATTGATGAAAAGCTGGAAGATATTGATAG
Seq A exon
AAAACATTCAGAACTGTCAGAACTAAACGTGAAGGTGATGGAAGCTCTCTCACTGTATACGAAGTTAATGAATGAAGACCCAATGTACTCTATGTATGCAAAATTACAGAGTCAGCAGTACTATCTGCAGTCGTCGGCTGTCTCTGCTTCCCAG
Seq C2 exon
GTATATCCAGGGCCTGCGCAGAGCGGTACCTACCTGGTTGCAGGGAGTGCACAGATGACCCATCTGCAGAGCTACAGCCTTCCCCCAGAGCAGCTGTCTTCTATCAGCCAAGGAGCAGTTCCATCCTCTGCAAATCAAGCTCTTCCTAGTCAGCAGACCCAGGCTTCTTACCCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.038 C2=0.449
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACCAGATGGGACCTCTC
R:
TTCGGGTAAGAAGCCTGGGTC
Band lengths:
226-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: