DreEX6027577 @ danRer10
Exon Skipping
Gene
ENSDARG00000002127 | stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:ZFIN;Acc:ZDB-GENE-031118-123]
Coordinates
chr2:31465596-31466144:+
Coord C1 exon
chr2:31465596-31465650
Coord A exon
chr2:31465736-31465889
Coord C2 exon
chr2:31466011-31466144
Length
154 bp
Sequences
Splice sites
3' ss Seq
AATATTGTGCCTGGTTTCAGGAA
3' ss Score
8.08
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTGCTTGCAACCAGATGGGTCCTCTCATTGATCAGAAGCTGGAAGACACTGACAG
Seq A exon
GAAACACTCAGAGCTGTCTGAGCTGAACGTGAAGGTCATGGAAGCTCTGTCTCTCTATGCTAAGCTAATGAATGAAGACCCAGTATACGCTATGTATGCCAAACTACAGAGCCAGCAATACTACATGCAGCAGGCCCCAAACTCTTCCCAACAG
Seq C2 exon
GTGTACCCTGGACAGTCCACTGGAGGGCAGTATGCAATGGGAAGCACAGCAGTACCAGGATACAACGTTCCAATGGAGCAGCTTACTGCAATGAACCAAGCAGGAACACCAATGGCAGGGCAGCCTACTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002127-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.346 C2=0.867
Domain overlap (PFAM):
C1:
PF031279=GAT=FE(22.5=100)
A:
PF031279=GAT=PD(37.5=57.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTGCAACCAGATGGG
R:
CTAGGAGTAGGCTGCCCTGC
Band lengths:
189-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]