GgaEX1055867 @ galGal3
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
NA
Coordinates
chr2:19574188-19576662:-
Coord C1 exon
chr2:19576608-19576662
Coord A exon
chr2:19576121-19576274
Coord C2 exon
chr2:19574188-19574363
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCGTATTATATATTTTCTAGGAA
3' ss Score
8.91
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CAATGTGCCACCAGATGGGACCCCTCATAGATGAAAAATTAAAAGATATAGACAG
Seq A exon
GAAACATTCAGAACTTTCAGAGCTCAATGTTAAAGCAATGGAGGCTCTTTCTTTGTATAACAAGTTGATGAATGAAGACCCAATGTATTCCATGTATGCAAAGCTACAAAACCAACAGTATTATATGCAGTCATCGGGTGTTTCTGGCTCTCAG
Seq C2 exon
GTTTATCCAGGGCAACCTCAAGGTAACGCATATTTGGTGGCAGGGAGTGCACAGATGGGCCACATTCAAGGCTATAATCTTCCTCCCGAACAACTCTCTTCTCTCAGCCAAGGCACAGTTACTCCATCTGCCAGCTCAGTACTACCTGGTCAGCCTGCACAAACGTCTTACACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.250 C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGATGGGACCCCTCATA
R:
TGTAAGACGTTTGTGCAGGCT
Band lengths:
219-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]