RnoEX0086633 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81247903-81250414:+
Coord C1 exon
chr17:81247903-81247957
Coord A exon
chr17:81248699-81248852
Coord C2 exon
chr17:81250239-81250414
Length
154 bp
Sequences
Splice sites
3' ss Seq
AATTCTGTGTAATGTTTCAGAAA
3' ss Score
7
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
CGATGTGTCACCAGATGGGACCTCTCATTGATGAAAAGCTGGAGGACATCGATAG
Seq A exon
AAAACACTCAGAACTCTCAGAACTGAATGTGAAGGTGATGGAGGCTCTCTCACTGTATACGAAGCTAATGAATGAAGACCCAGTGTACTCTGTGTACGCCAAGTCCCAGAGTCAGCAGTACTATGTGCAGGCCTCTGGTGTGTCCGCTCCCCAG
Seq C2 exon
GTATACCCAGGGCCTGCTCAGAGCGGAGCCTATCTGGTTGCAGGGAATGCCCAGATGACCCATCTCCAGAGCTACAGCCTTCCCCCGGAGCAGCTGGCTTCCATCAGCCAAGGAGCAGTTCCTCCCTCTGCAACCCCAGCCCTTCCTAATCAGCAGGCCCAGGCTTCTTACCCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817-'20-24,'20-23,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=0.077 C2=0.458
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACCAGATGGGACCTCTC
R:
TTCGGGTAAGAAGCCTGGGC
Band lengths:
226-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]