BtaEX0034779 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002658 | STAM
Description
Bos taurus signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (STAM), mRNA. [Source:RefSeq mRNA;Acc:NM_001076842]
Coordinates
chr13:32438222-32445156:+
Coord C1 exon
chr13:32438222-32438276
Coord A exon
chr13:32438772-32438925
Coord C2 exon
chr13:32444523-32445156
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATTCTTGTATAATATTTCAGAAA
3' ss Score
6.48
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CAATGTGTCACCAGATGGGGCCTCTCATTGATGAGAAGCTGGAGGATATTGATAG
Seq A exon
AAAACATTCAGAACTCTCAGAACTGAATGTGAAAGTGATGGAAGCCCTGTCCTTGTATACCAAGTTAATGAATGAAGACCCCATGTATTCCATGTATGCAAAATTACAGAATCAGCAGTATTATATTCAGTCATCTGGAGTTTCTGGTTCTCAG
Seq C2 exon
CACAATGGTCAGCTCCGTCCCGGGAAGTACGTATCCCAGCCAGGCTTCAGTGTACAGTCCTCCCCCTGCTGCCACAGCTGCTCCCGACGTCACCATCTACCAGAACACAGGGACCAGCCTGTCCCAGGTGCCGAACTATACATTACCGTCCACACTGCCCCAGCCTGGGGGCAGCCAGCAGCCACCTCAGCCGCAGCAGCCGTACTCCCAGAAGGCTCTGCTATAGGACTGGAGTCCCCTTTGTGGCAAATACCCGCCGATCGCCAATGGCAATGTTACGAGATTCTTTAATATCTTAAGATTGGTTTACCCTCAGCTTATAGGAATCGTATCTTGGTCAACACGTTCCAATGTTCAAGAAGGGAGATCCCTCTTCAATTTGCACTGACTTTTTAGAGAGTCTCCCCTCCCCTCCCCTGTGAGGAATGAAACTACTTACAACATATAATTCCTTTCATAATATGAAAGGGTCAATGCAAGATTATCTGTCTCGTAAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002658_MULTIEX1-12/13=11-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.096 C2=0.947
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATGGGGCCTCTCATTGA
R:
TTCTGGGAGTACGGCTGCTG
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development