RnoEX6054230 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81244429-81247957:+
Coord C1 exon
chr17:81244429-81244523
Coord A exon
chr17:81247398-81247485
Coord C2 exon
chr17:81247903-81247957
Length
88 bp
Sequences
Splice sites
3' ss Seq
TAACCATTTAACTTCTGTAGGAT
3' ss Score
8.11
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TTAAGACAGAGAAGAAGACGGTACAATTCAGTGACGATGTTCAGATAGAGACAATAGAACCAGAACCAGAACCGGAACCAGCCTTCATTGATGAG
Seq A exon
GATAAAATGGACCAGTTGCTACAGATGTTGCAAAGTACAGATCCCAGCGATAATCAGCCAGACTTACCAGAGCTACTTCATCTCGAAG
Seq C2 exon
CGATGTGTCACCAGATGGGACCTCTCATTGATGAAAAGCTGGAGGACATCGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817-'17-22,'17-20,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=0.900 C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGAGAAGAAGACGGTACA
R:
TCGATGTCCTCCAGCTTTTCA
Band lengths:
144-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]