MmuEX6099040 @ mm10
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14134353-14138190:+
Coord C1 exon
chr2:14134353-14134441
Coord A exon
chr2:14137487-14137574
Coord C2 exon
chr2:14138136-14138190
Length
88 bp
Sequences
Splice sites
3' ss Seq
GAACTATTTAATTTCTGTAGGAT
3' ss Score
7.61
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TTAAAACAGAGAAGAAGACGGTACAGTTCAATGATGATGTTCAGATAGAGACAATAGAACCAGAACCAGAACCAGCCTTTATTGATGAG
Seq A exon
GATAAAATGGACCAGTTGTTACAGATGTTGCAAAGTACAGATCCTAGTGATAATCAGCCAGACTTGCCAGAGCTGCTTCATCTTGAAG
Seq C2 exon
CAATGTGTCACCAGATGGGACCTCTCATTGATGAAAAGCTGGAAGATATTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'28-28,'28-25,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=0.833 C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAAGAAGACGGTACAGT
R:
TCAATATCTTCCAGCTTTTCATCAA
Band lengths:
136-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types