GgaEX6018776 @ galGal3
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
NA
Coordinates
chr2:19576608-19580078:-
Coord C1 exon
chr2:19579990-19580078
Coord A exon
chr2:19578325-19578412
Coord C2 exon
chr2:19576608-19576662
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTAGACAACTTATGTTCTAGGAT
3' ss Score
6.93
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
TGAAAACTGAGAAGAAAACAGTGCAGTTCAGTGATGAAGTTCAAGTAGAAACAATAGAACCTGAGCCTGAGCCAGTTTATATTGATGAA
Seq A exon
GATAAAATGGACCAGCTCCTGCAGATGTTGCAAAGTGCAGATCCAACTGACGACCAGCCAGACCTCCCAGAATTACTTCATCTTGAGG
Seq C2 exon
CAATGTGCCACCAGATGGGACCCCTCATAGATGAAAAATTAAAAGATATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=0.800 C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACTGAGAAGAAAACAGTGCA
R:
TTTTTCATCTATGAGGGGTCCCA
Band lengths:
127-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]