HsaINT1034538 @ hg38
Intron Retention
Gene
ENSG00000272529 | RP11-415F23.4
Description
NA
Coordinates
chr3:16345126-16346440:+
Coord C1 exon
chr3:16345126-16345243
Coord A exon
chr3:16345244-16346007
Coord C2 exon
chr3:16346008-16346440
Length
764 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
3' ss Seq
CATCCTCTCTTCCTCTGCAGCAA
3' ss Score
11.72
Exon sequences
Seq C1 exon
CCCCACCAAAACCTCTAATAAGGCACACAGCTCTGCTGACATCCCATTTCAGTGTTTTGAGACCCTAAGCAGCAGACGACCCAGTTCAGCCCACCTGGATTTCTGGCCCACAGAAACT
Seq A exon
GTAAGATAATAAGTAGGTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAAAGCTGTTATAGAATTATCTCCCACTTTTTTATCTCAAACACATTGGGAAAACCTAAAGATATAGCCCCTGTTATCACATTGAGCCCTTAACTTGCCACAGGATGCATAAACATTATTTTTGGGCATGTTGTGAGGGTGTTTCTGGAAAAGATTAGCATTTGAATGGGTCAACTGAGTAGACCAGATGGCCCTCCCCAGTGTGGGTGGACACCATCCAGTCATTGAGGACCTGAACAGAACAAAGGGTGGAGGAAGGCTGAATTAACACCGCCTGACTGCTTGAACAGGAACGTCCATCTTCTGCCCTTGTTGCTCCTGGTTCTCAGGGCTTGGGACCTGGACTGGAGTCCACACCATCAGCTGCTAGCTCTCAGGCCTCTGAACCATACCACTGGCTTTCCTGGGTCTCCAGCTTGCAGATAGCAGACTGTGGGACTCCTCAGCCTCCATAATCACATGAGCCAAAACCTTATAATAAATCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGTGCGCGCACGCGCACATGTGCATGTGTATGTGTATAATCTCCTACTGGTTCTGTTTTACTGGAGAACCCTAATACACTTCTTTCTTGTTGTTCTGTGGCATACACTGAATATTTTAAACCGCATTTGTCACAGGATTTTGAAAACGTGATCATTTGTTTCATCCTCTCTTCCTCTGCAG
Seq C2 exon
CAAGAATCAAAATTCACTTTGCCCCATGATCTTCACCAGAACGGCATACTTGCCTCTCCCCTCGTCAGATTGAAAAGGTTCCTATGATTTAGGGTCTTCCAGCACCCCTCAGGAAGCTTGACAATGAAGAGGAATTATTGATGAATGTGGAAAGGCCAGGGGGTGCACATTCATTTTTAATGACTACACACCTTCCCTTGACTAAATGGAATCAATCCTTCCTGCCTGAATTTCATCCATTCATCATGCTCTCACAGTGGCTGACACACAGTAGGAACTCAATATTTATTTGTTGGATAAATTTTTAAAAAGATATAACTTACTTGTATCACTAAATTTTGTATATGAAGTGAAATATGGCTGTCTGAGAAAATAGGACAATTGAGTTTATGGAAGAAAAAAGTGCAGATAAAGATTAAAGGTCAAATACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272529:ENST00000606713:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCTGACATCCCATTTCA
R:
GTGTGTCAGCCACTGTGAGAG
Band lengths:
358-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains