HsaEX1031096 @ hg38
Exon Skipping
Gene
ENSG00000131378 | RFTN1
Description
raftlin, lipid raft linker 1 [Source:HGNC Symbol;Acc:HGNC:30278]
Coordinates
chr3:16344544-16358047:-
Coord C1 exon
chr3:16357932-16358047
Coord A exon
chr3:16347632-16347685
Coord C2 exon
chr3:16344544-16344644
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTGACCCTCAATTCCCTAGTTC
3' ss Score
6.69
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATTCCTTACATGGCTTGACAGATGGAGTATTCATCTTTGAAGCTGTTTCCACAGAAGATAGCAAAACCATACAGGGCTATGATGCTATTGTGGTTGAACAATGGACAGTCCTGGAA
Seq A exon
TTCCCCTTTCACAGAGAAAGCTCCTTCCAGAGAGGAGGTGGTGTACACACAGAG
Seq C2 exon
GGGCTTGTGCAGTGATCTAGAAGGTGGTGGACCTGAAGAGACCTGATTCTGGGAGGCCACAGAATACCTTGGGTGGCCCTTGGGATCTAAGAATAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131378-'45-33,'45-32,46-33
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=NA
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(7.9=100)
A:
PF152501=Raftlin=PD(1.5=33.3),PF152501=Raftlin=PU(4.7=27.8)
C2:
NA
Main Inclusion Isoform:
ENST00000334133fB24431
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATACAGGGCTATGATGCT
R:
TCTTAGATCCCAAGGGCCACC
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains