HsaINT1035320 @ hg38
Intron Retention
Gene
ENSG00000235381 | RP11-477D19.2
Description
NA
Coordinates
chr6:155253139-155256724:-
Coord C1 exon
chr6:155254263-155256724
Coord A exon
chr6:155253765-155254262
Coord C2 exon
chr6:155253139-155253764
Length
498 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTTACATTTCCTGCTGCAGATT
3' ss Score
10.02
Exon sequences
Seq C1 exon
TCGCTCAGGATGTCACTCTCTTTGATGAGATTGTCGGCAAAATCTGCCAAGCCGGGGTGTGGGTATTTCCCGGGAGAAGTGCTCTTGGAGTCCTGCCTGCCCTCAGCCGTGGGGCAGCCGCTGCTCTGGGTGCCGCTGCTCAAGCTGCCCTCGTCAGAGTCCAGCAAGGTTCCCTTGCCAGTCTCACCGGTCCACTCGTTGCTGGAGGAATTCTTCAGGACTTTTAAAGACCTGGATGAAGCTACAGTGAGAAAAACACATTTCGCTGTGATACAGAAACAGGTTACACAATGTGTAATGTTTGCCTCAAAGCTTGTGTAAGATTTAACATTAAGATTTTATTTTATGATATGACTTCAGTTAGCAACTATCCTGGTAATTAGGCAAAAATGTAGCTACTGAAAACATGGACATTTTTGACTTAGGTTTACAGTTGTAAGTTAGGCAATTCAGCATTTTTAGATTACCAGAGCTCAATTATGTAAATAGAACTAGACACTAGAAACTACTACATGGGCTAAGATTCTTATTTTGCCAAGGAGTAAGTTGAAAAGTTAATTGGTAATAATAAATCTAGGCTCCTTTCTTTCACTAAGGTGCTTTGTAATTTGATCATGAAGATCACACCATATTCCTATGCATCTTCTCACCTTGTGGATTTCCCTTGCTGCTCAATTAAAAGTAGAAAATGCCCCTCCCCCCCCCTTTTTTTTTAAAGACAGTGTCTTGCTCTGCCACCCAGGCTGGAGTGCAGTGGTGTGATCTCTGCTCACTGCAACCTCCGCCTCCTGGGCTCAAGTGATCCTCCCATCTCAGCCTCCTGAGTAGTTGGGACTATAGGTGCGCATGATCACGCCTGGCTAATTTTTATATTTTTTTTGTAGAGATGGGGTTTTGCCATGTTGCCCAGGTTGGTCTCAAACTCCTGTTCTCAAGAGCTCAAGGGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCAGCCTAGAAAATGCTCTTTATCTCTCATATGAGAACTGTCTCTGCTGGAATTTCAAAACAACTTTCTGAAATTTTATGTTATAGGTGTGTGTGTGTGTGTGTGTAGTTCTGTTCTCTTGGATTGAAAGAAGGAAGGGAGTTCTCAGTTTTGGTGTTTCTACAAAGTAATAACAGCATGTTATTTTGATGGCCAGTTTATTTTGACAATGGAGAAAATAGTAAATATGTGGTAGATCTGAAGAGGTCACACTGATTTGACATGAAAAAGCGAAGTTTTACATTTTCTAAGCCTAAAAACAAGAAAGATAATAACAAAATAGTTAATGTAGAAATAAGGTTCTGAAAACTTAAGCTGAAATTTTAGAAACAAGCAGAAAGAACAACGTGATTTGAAATGCTTACTTGGTGCCCTATCGATTAAGAACGAGTATAAGAGGCCCCTTAACTTAGATGGCATTACATCCCAATCAACCCATTGTTAAGTTGATAATATGGAAAGTCGAGAATGCATTTAATGTACCTACTAACCACTGCGGCTTAGCCTAGCCTGCCTTCAGTGTGCTCAGAACACTTACATTAGCCTATGGTTGGGCAGAACACAAGGCCTGTTTTATAATTAAGTGTTGAGTATCTCATGAAATGTATTGAATGCTGCACTAGAAGCAAAAAACAGAATGGTTGTCTGGGTACTCGAAGTACGATTTCTACTGAATGTGTGTCACTTTCACACCACGGTAAAGTCGAAAAATTGTAGGTTGAACCATCAGAAGGTGGAGACCCTCTGTGTAAGGTTCTTGATCTTCATTCAGCATTGACCTTCAGGATGCCTGGCACTGTTCTGAGCACTGGGAATACAGCAGTGAGGAAAACAAAGTCCCTGGACCCATGCACATCTTAGTGGAAGAAACAAAATCGTACATTTGGACTATGTCAGCGGGTAGGAAGACAAGGGACTGGGGGTTGGGGGTGGCTGTATTTTACAGTAGAACGTCTGGGAGCAAGAGGCATGTTTAGGTTTCTTAAAAGGAGATAAAGGTACCTCGATGACTTACAAAGTGAAAAGTCACAGCTATGTTACAAGAGCATATATCCTTTTCAGAAGCTCATAATATTTTGTTGAATAAACACAAGGCTAGCAAAATTCTCACCTAATTTGGCCGAAACAGGAACTCGGTTCTTAAGAGGTACCAGGCGATCCTTACACGTTTTCTCCAGTGGTAATTCACACTTTATGTGACGCCTGAAGTTCTCCCTCAGAATAGAACGAATCACCTTAACAATGTTGGTTTTGCTTTCACTGTCACTGGGTGGGGGGGGAGAGAAAACAGCAGAAGTGTCCACAGTGTTCATCGTGCTTCCATTCCACGCCCGCCTGTGTTCCTGTGCCTTGCACCTGCTGGACCAGGCTGCCAGCCAGCCACCCAGCAGCAGTGCCATGTGGCCTCCCGTACAGAAGGAG
Seq A exon
GTGAGAATTGATCACTCTTAAGATTTTGATATTTATTTAATCAACATAGTCTCCTACTAGCGGCCTCAGTTGCCTTTTTCGGAGGGTGGGGAGTATGACCCTGATATCATCAAAATTCAGGAGGGCACTAAATATAAATTCCCTTAAGAGACATAATTCTATGTTATTTCTGTTGGTTTTAATCTTTGGAAGTCAGTCATACCTGCAACACAACTGAAAGATGGTTTCTGGCCGTCCTTCTATTTCTGACTTCGTATGGATCAGTTCCCATATGGAATTATTTTCTGTCCCTATGTAAAAGGAAATGGAAACAAGAGTCTACAACTTTGCCCAAAATGCTGTGGTTAAGAACACTTGTAAAGTTGAAATCTCATCAGTTAAGAAAGTCTAATATTCCCAGTCCTGGCTCATTTTCTTCTGTGGCTTGTTCTATGTATGATTTTCACAGTTACAAGAACTGAAATGCCTTTTGGTTACTTTTTACATTTCCTGCTGCAG
Seq C2 exon
ATTTTCCTCCATCTGAACTGCCTTCACCCTCTCTCTGGAGCCCCTCTCTGGGGAAGAGGAGATTCAGTGGATCCTATTCTTCAACCTCCTTTGCAGTTTTGCCCTTTCCTTGGAAGGAACAGGAGCTGGGGTACTTGAGGTAAAAGAGGCCTGCCCCAAATGTGGTCATTTTCTCGAAAACATAAGCACTTCTGACAAAAGTTAAACAGAAGCCCAGCAGGTCACTGCATGACTCAGCCTGCTGGCCTCTTCTGTCACCAGATACCTGTCACCAAAACAAGGTTACTCTGGAAGGATCTCTGAACATTTTCCAGAGTCAAAGATTTTTTTCTTTTTATATCACCTACAGTACTACCTAACCTTAAGGAATTTTCTGCTATATTCTAAATTTGTAAAAACATAAATTTGTGGATCTTTGTTCTTCTAACACATTTTAGGGTATCAAGGCAGAAAGGAAAATGTTGAAAACTATTGATAGGGAAAATAAGGAAACAATGAAAGGCATTTGGCAAAGAAAAAGCTATCCACCAGCATTTAGTTTCTCCCAGAAGTCTGCTAAGGAACATCAAAACAACCTCTCTTGTCCTCATTTTCCTTGTCTATAAAATAAAAGGCACCAAAAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235381:ENST00000435295:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCCGAAACAGGAACTCG
R:
CAGAGAGAGGGTGAAGGCAGT
Band lengths:
344-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains