HsaINT1044254 @ hg38
Intron Retention
Gene
ENSG00000146426 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr6:155252948-155254060:+
Coord C1 exon
chr6:155252948-155253053
Coord A exon
chr6:155253054-155253972
Coord C2 exon
chr6:155253973-155254060
Length
919 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTCCATTTCCTTTTACATAGGGA
3' ss Score
8
Exon sequences
Seq C1 exon
CCCTCGAATTCCCGGCCTGCACACAACTCTACTGACTTGGACCCATTTAAATTCCGCTGGTTGATCCCCATCTCCGCGCTTCAAGTCAGACTGGGGAATCCAGCAG
Seq A exon
GTAACTGTTTCGTGCAGTATGATGCCAGAAAAAGCATTTTAGTAGACTTAACTGTGGAATGTAAATTAAGAAAGGACCTTGGGGATAATTTTTGGTGCCTTTTATTTTATAGACAAGGAAAATGAGGACAAGAGAGGTTGTTTTGATGTTCCTTAGCAGACTTCTGGGAGAAACTAAATGCTGGTGGATAGCTTTTTCTTTGCCAAATGCCTTTCATTGTTTCCTTATTTTCCCTATCAATAGTTTTCAACATTTTCCTTTCTGCCTTGATACCCTAAAATGTGTTAGAAGAACAAAGATCCACAAATTTATGTTTTTACAAATTTAGAATATAGCAGAAAATTCCTTAAGGTTAGGTAGTACTGTAGGTGATATAAAAAGAAAAAAATCTTTGACTCTGGAAAATGTTCAGAGATCCTTCCAGAGTAACCTTGTTTTGGTGACAGGTATCTGGTGACAGAAGAGGCCAGCAGGCTGAGTCATGCAGTGACCTGCTGGGCTTCTGTTTAACTTTTGTCAGAAGTGCTTATGTTTTCGAGAAAATGACCACATTTGGGGCAGGCCTCTTTTACCTCAAGTACCCCAGCTCCTGTTCCTTCCAAGGAAAGGGCAAAACTGCAAAGGAGGTTGAAGAATAGGATCCACTGAATCTCCTCTTCCCCAGAGAGGGGCTCCAGAGAGAGGGTGAAGGCAGTTCAGATGGAGGAAAATCTGCAGCAGGAAATGTAAAAAGTAACCAAAAGGCATTTCAGTTCTTGTAACTGTGAAAATCATACATAGAACAAGCCACAGAAGAAAATGAGCCAGGACTGGGAATATTAGACTTTCTTAACTGATGAGATTTCAACTTTACAAGTGTTCTTAACCACAGCATTTTGGGCAAAGTTGTAGACTCTTGTTTCCATTTCCTTTTACATAG
Seq C2 exon
GGACAGAAAATAATTCCATATGGGAACTGATCCATACGAAGTCAGAAATAGAAGGACGGCCAGAAACCATCTTTCAGTTGTGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146426:ENST00000318981:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAATTCCCGGCCTGC
R:
TGCAACACAACTGAAAGATGGT
Band lengths:
191-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains