RnoINT0150939 @ rn6
Intron Retention
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44429541-44430901:+
Coord C1 exon
chr1:44429541-44429646
Coord A exon
chr1:44429647-44430813
Coord C2 exon
chr1:44430814-44430901
Length
1167 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTCCACTTTCTTTTACCCAGGGA
3' ss Score
7.75
Exon sequences
Seq C1 exon
CCCTCCAATTCCCGGCCTGCTCACAACTCTGCTGACTTGGACCCATTTAAATTCCGCTGGTTGATCCCCATATCTGCGCTTCAAGTTAGACTGGGGAACACGGCAG
Seq A exon
GTAAACGCTTTGGGGAATTCAATGACAAGAAACATTTCCATGTGCTTTTCATGCCTGTGGGGTGAAGAATAAGACTTACCTGTTGATAAGATTTCTGGCAGGAACAATTTATCTGAGCTCATGGGTTTGGGGCCGTGGTACTGTGGCAGCCTGGTACATTGTAACAGGAGCATGTGCTGGCAGACATCTGTTCACTCAGTGGTGGACAGGAAGCAGAGGATGACAGGAAGTGGGTGAGAGCCTGAGTGATTAAGAGCACACCTTCTCTGATCTGCCATCCTCCCCCTTGGTCCCAGTCTTACAGCCTCCACCCCATCTCCCCCTAGGCTAGCCACTAGGTCTTGAAGTGCATGGGCCTTGGGGACATCTTCAAACCATTGCACCTGGGGTCATTTTTGCATAGGGGTATTTTACTTTTTAGACAGAAAAAATGAGAACTGGGTTGTCTTTCTTCACAGTCTTTGGAAGAAGCCAAGTGGCACTGGATGGCCTTTTATGGCCTCTGCATTGTTTCTTCACTTTTATAGTCAACAACTGTCAACCATTTCCTTTTTGCTGCAGGTTTTGATATCCTAAAACAAAGTTCCACAAATTTATATTATATGAACTTAGATGTATTAGAAATTCCTTAATATTAAGAATACTGCAAATAAACAAAGAACCCCTTTGACTGAACAATGTTCCAAAGATCTTCTAGAATAACTGGCAGTAAGAGCCTTTGCTGAGAAAGACCCATAGGTTTATGTGCCAGAGGTGCTTATGGTTCTAAGAACGTGCCTGCATGGGACAAGGGTGGGGCTGCTCTGTCATCTCAAGTTCCTGAGCTAATCCTCTTGTTAAAGAGGAGCAAGGATCTGGAACTAAGTAGCTGAGGCAAAGTGCCTACCACAAATTCAAGGACAGCCTGGGCTACAGCGTGAAATCCACACACACAATAGAAGCAAAACAAACAGCATAATCTACCACCCAGCAAGACAAATGGGCACCTCCAAGGAGGGGTGGAGAATTCCAGCCCAAGCTCTGTAGCTACTTGTTACTGTCTCGGTGTGCTGTGGATGAAAAGGAAGAGAGGACCTTGGGATTTTTGAATGGTTACTACCCCAAGTATCCTCAACTGTAGCATTTTGACAACCTTGTGGACTCTTGTTTCCACTTTCTTTTACCCAG
Seq C2 exon
GGACTGAAAACAATTCCACCTGGGAGCTGATTCATACCAAGTCAGAAATTGAAGGACGGCCAGAGACCATCTTTCAACTGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728:ENSRNOT00000065386:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAATTCCCGGCCTGC
R:
TGCAGCACAGTTGAAAGATGGT
Band lengths:
191-1358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]