Special

GgaINT0085350 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr3:52489452-52490392:+
Coord C1 exon
chr3:52489452-52489557
Coord A exon
chr3:52489558-52490298
Coord C2 exon
chr3:52490299-52490392
Length
741 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
AAAAAAATGCTTTCTTCTATGCA
3' ss Score
-1.41
Exon sequences
Seq C1 exon
CCTACTAATGTTCGTGCTGCCCATAATTATGGTGACTTGGATCCATTTAAGTTTCGCTGGCTGATTCCTCTATCTGCTCTTCAAGTTCGGCTTGGGAACACAGCAG
Seq A exon
GTAATTAATTCCCTTGTACTGAAAACTCTGTAATGAATAGTTTTCTGGGATTCTCCAGTACTGCTTCTTCTGTATGTCATTTAGGAGCTGCTGGGAACAGGCAGGCATAGAGAAAGTAATATCTACTGTTGTCTCTGACCTCAGAGGACACAGACCTGATTCATAAACAGACTTTCTCAATTCCATATGCTGGCTTCATCCCTCTTCTTCCCTGAGTTCAGGAAGATGCGCGGTGATAGGAAGGTATGACAGAATGAAAATTCCCGATAGAAAGATACAAGGAACAGGATGGGGATTTACCTTGGCTGACATCCTGATAATGCCCTTTCTGTGTGCGGAGTCTTGTGTTTTTCCAACTGTAGGAAGCTGACTGTATATCTGATGTCATAGAGGACCATGTTTTTGTTTTCTCTGAGTTGATCTTTATGATCCTACCCAGTTCAGAACCTTGTGTAGTGTCACCAAGTGTCTTAGAGGAAATGGGAGAAGGTCTTCTAAGGCTGGAAGGCAGCAAGAAGCATAAGAATGGGGGAAAGAAACTCTCCAAGAGAGAAGGTCGAGTTTTCAAAGGTAGCCCTGCAAGGCTGCTAGAACTTGAGAGTTCAGGGAAGTTTCTTTAAGGTTCTACCTCAGATGAGATCTTCTGTGGATCTACCACACCTATGTTAACACTGCTCTCCATGGGTCTTTCTGATGCTGACTGTTTTGCAAAGTATATATAAAAAAAATGCTTTCTTCTAT
Seq C2 exon
GCACAGGAACAGAGAACAGCTGTATCTGGGAACTGATTCACACAAAGTCAGAACTGGAAGGCAGGCCAGAAACCATTTTTCAGTTATGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTAATGTTCGTGCTGCCCA
R:
CTGCTGCATAACTGAAAAATGGT
Band lengths:
198-939
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]