MmuINT0160130 @ mm10
Intron Retention
Gene
ENSMUSG00000023800 | Tiam2
Description
T cell lymphoma invasion and metastasis 2 [Source:MGI Symbol;Acc:MGI:1344338]
Coordinates
chr17:3514671-3516057:+
Coord C1 exon
chr17:3514671-3514776
Coord A exon
chr17:3514777-3515969
Coord C2 exon
chr17:3515970-3516057
Length
1193 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTCCACTTCGTTTTCCCCAGGGA
3' ss Score
10.07
Exon sequences
Seq C1 exon
CCCTCGAATTCCCGGCCTGCTCACAACTCTGCTGACTTGGATCCATTTAAATTCCGCTGGTTGATTCCCATATCTGCGCTTCAAGTTAGACTGGGGAACACGGCAG
Seq A exon
GTAAACACTTTGGGGGGAAATGCAGTGACAAGGTGTGCTTTTCACATGTGGTATGGAAACATAAGGCTTCCATGTTAACAAGATTCCTGATAGAAAGGAATGGTTTATTTGAGCCCATGGGTTTCAGGCCCGTGGTACAGTGGCAGCATAGTACATTATAGCAGAAGCATGTGCGGGCAGACATCTGTTCATTGTGGTGGACAGGAAGCAGAGAGGAAGACAGGAGTGGGCGAGGGCCTTAGTGACTGAGAGCACACCTCTGACACACCACCCTCCCCCTAGGTCCAGTCTTACAGCTCCCACCCCTTCTCCCTCCAGGCTTGATGTGCATGGGCCTCGGGAACCCCTTTGAACCATTGCACCTGGGGTCACTTTTGCATGTACTCTTTAGAGAGAGAAAATGAGAACTGGGTTGTCTTGGTGTTTCTTCACAATCTTTTGGAAGAAACCAAGTGGCACTGGACGGCCTTTTACGGCCTCTGCATGGTTTCTTCACTTTTATACTCAACAACTGTCACCATTTCCTTTTTGCTGTAGGCTTTGATACCCTAAGATTAAAGTTCCACAAATTTATATTTTATGAACTTAGACATACTAGAAAATTCCTTAGTACTGCAAATAAAGAAAACGCAACAACCCCCCCAACCCCACCCCTCCTTGACTTAGAACAATGTTTGGAGGACCTTCTAAACTAACTAACTGGCAGGAAAAGCCTTTGATGCTAGAGACCCCCAAGGCTTCTGTGGTCCTGCCAGAGGCGCTTTATGTTTCTAAGAATGTGACTGCATGGGACAGGGGGGGGGGGCGGCTCTGTCACCTCAAGCTCTTGAGCAAATCGTCCTGTTTATCTCAAGAGGGGGAAGGAACTAGAACTAGGTAGCTGAGGCAAGATGTCTGCTACAAATTCAATGACAGCCTGGGCTACACACACACACACACCAGAAGCAAAAAAACAAAACAAACAAAAAACCCCACAATAAAAACTACCACCACCAAAACAACCAGGCACCTCCAAGGAGGGATGGAGAATTTCAGCCCAAGTTTTGTAGCTTTTTCTTACTATCACAGAGTGTGCCGTGGAAGGAAATGGAGAGACAGACCTCCGGATGTGTGAATTGTTGATACCCCAGGTATCCTCAACTGTGGGATTTTGGCAAAGTTGTGGACTCTTGTTTCCACTTCGTTTTCCCCAG
Seq C2 exon
GGACTGAAAATAATTCCACGTGGGAGCTGATTCATACCAAGTCGGAAATTGAAGGACGGCCAGAAACCATCTTTCAACTGTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023800:ENSMUST00000072156:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAATTCCCGGCCTGC
R:
TGCAGCACAGTTGAAAGATGGT
Band lengths:
191-1384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types